Gene	Pathway	Pathway source	Gene number	Edge number
POLR2A	Abortive elongation of HIV-1 transcript in the absence of Tat	reactome	23	253
POLR2A	Activation of anterior HOX genes in hindbrain development during early embryogenesis	reactome	120	5806
POLR2A	Dual incision in TC-NER	reactome	63	1948
POLR2A	Elongation arrest and recovery	reactome	32	496
POLR2A	FGFR2 alternative splicing	reactome	27	317
POLR2A	Formation of HIV-1 elongation complex containing HIV-1 Tat	reactome	42	849
POLR2A	Formation of HIV elongation complex in the absence of HIV Tat	reactome	44	934
POLR2A	Formation of RNA Pol II elongation complex	reactome	44	934
POLR2A	Formation of TC-NER Pre-Incision Complex	reactome	53	1056
POLR2A	Formation of the Early Elongation Complex	reactome	33	528
POLR2A	Formation of the HIV-1 Early Elongation Complex	reactome	33	528
POLR2A	Gap-filling DNA repair synthesis and ligation in TC-NER	reactome	62	1884
POLR2A	HIV elongation arrest and recovery	reactome	32	496
POLR2A	HIV Transcription Initiation	reactome	44	945
POLR2A	MicroRNA (miRNA) biogenesis	reactome	23	114
POLR2A	mRNA Capping	reactome	29	402
POLR2A	Pausing and recovery of HIV elongation	reactome	32	496
POLR2A	Pausing and recovery of Tat-mediated HIV elongation	reactome	30	435
POLR2A	PIWI-interacting RNA (piRNA) biogenesis	reactome	29	127
POLR2A	pre-mRNA splicing	reactome	135	8698
POLR2A	Processing of Capped Intron-Containing Pre-mRNA	reactome	37	612
POLR2A	RNA Pol II CTD phosphorylation and interaction with CE	reactome	27	351
POLR2A	RNA Polymerase II HIV Promoter Escape	reactome	44	945
POLR2A	RNA Polymerase II Pre-transcription Events	reactome	64	1703
POLR2A	RNA Polymerase II Promoter Escape	reactome	44	945
POLR2A	RNA polymerase II transcribes snRNA genes	reactome	70	2412
POLR2A	RNA Polymerase II Transcription Elongation	reactome	42	861
POLR2A	RNA Polymerase II Transcription Initiation And Promoter Clearance	reactome	44	945
POLR2A	RNA Polymerase II Transcription Initiation	reactome	44	945
POLR2A	RNA Polymerase II Transcription Pre-Initiation And Promoter Opening	reactome	44	945
POLR2A	Signaling by FGFR2 IIIa TM	reactome	19	127
POLR2A	Tat-mediated elongation of the HIV-1 transcript	reactome	40	780
POLR2A	Tat-mediated HIV elongation arrest and recovery	reactome	30	435
POLR2A	TP53 Regulates Transcription of DNA Repair Genes	reactome	61	1425
POLR2A	Transcription-Coupled Nucleotide Excision Repair (TC-NER)	reactome	44	946
POLR2A	Transcription of the HIV genome	reactome	44	945
POLR2A	Transcriptional regulation by small RNAs	reactome	104	2885
POLR2A	Transcriptional regulation of pluripotent stem cells	reactome	28	184
POLR2A	U12 Dependent Splicing	reactome	50	1225
POLR2A	Viral Messenger RNA Synthesis	reactome	43	502
POLR2A	Purine metabolism	kegg	159	4380
POLR2A	Pyrimidine metabolism	kegg	99	1960
POLR2A	Huntingtons disease	kegg	182	1941
POLR2A	Hs_TGF-beta_Receptor_Signaling_WP560_90187	wikipathways	28	32