KnockTF-Search

T(co)F Overview

T(co)F:	YBX1
Species:	Homo sapiens
Knock-Method:	CRISPR
T(co)F Class:	Cold-shock domain factors
T(co)F Superclass:	beta-Barrel DNA-binding domains
Biosample Name:	HepG2
Tissue Type:	Liver
Biosample Type:	Cell line
# of Control:	2
# of Treat:	2
Data Source:	ENCODE
Profile ID:	ENCSR548OTL
Platform:	-
Pubmed ID:	22955616

YBX1- Target Gene Network

T(co)F

up-regulated gene

down-regulated gene

#T(co)F-target relationships supported by the ChIP-seq data are represented by the thick lines

Gene Type: # of Top Genes:

Target Gene Information of YBX1

Showing 1 to 15 of 11,237 entries

Search:

Target Gene	T(co)F	Mean Expr. of Control	Mean Expr. of Treat	Fold Change	Log2FC	Rank	P-value	Corrected _P	Promoter _T(co)F	SE_T(co)F	TE_T(co)F

Target Gene	T(co)F	Mean Expr. of Control	Mean Expr. of Treat	Fold Change	Log2FC	Rank	P-value	Corrected _P	Promoter _T(co)F	SE_T(co)F	TE_T(co)F
EREG	SRPK2	1.36	0.035	0.0257353	-5.28011	1	0.112512837269621	0.972884761036538	49 AML1	479 AIRE	450 AHR
LAIR2	SRPK2	6.685	0.195	0.0291698	-5.09938	2	0.230675822884736	0.972884761036538	36 AR	422 AHR	368 AHR
IFI27	SRPK2	12.655	0.4	0.0316081	-4.98356	3	0.661410921903915	0.972884761036538	46 EBF1	62 BRN2	423 AHR
CYP24A1	SRPK2	9.39	0.58	0.0617678	-4.017	4	0.0529577897993993	0.972884761036538	61 AML1	456 AIRE	438 AIRE
SOCS3	SRPK2	0.435	0.03	0.0689655	-3.85798	5	5.87756793490271e-05	0.76237933683623	86 AHRARNT	513 AHRARNT	493 AHRARNT
CD109	SRPK2	3.305	0.25	0.075643	-3.72465	6	0.0374234332936123	0.972884761036538	40 AP4	559 AHR	460 AHR
VWA3A	SRPK2	0.025	0.295	11.8	3.56071	7	0.00807370896449121	0.972884761036538	39 BATF	269 AHRARNT	402 AHRARNT
AREG	SRPK2	19.915	1.725	0.0866181	-3.52919	8	0.287101139518291	0.972884761036538	39 AML1	555 AHRARNT	517 AHRARNT
HLA-DOA	SRPK2	0.03	0.34	11.3333	3.5025	9	0.113108993489633	0.972884761036538	46 ALX3	480 AHR	445 AHR
ADH1C	SRPK2	0.095	1.07	11.2632	3.49354	10	0.0034883256955972	0.972884761036538	36 CDP	354 ALX4	342 ALX4
CLCF1	SRPK2	1.205	0.11	0.0912863	-3.45346	11	0.303868671552904	0.972884761036538	106 AML1	447 AHR	461 AHR
TNS4	SRPK2	1.625	0.15	0.0923077	-3.43741	12	0.107309384111252	0.972884761036538	34 AREB6	566 AHR	476 AHR
SLC6A14	SRPK2	8.89	0.835	0.0939258	-3.41233	13	0.188447727836912	0.972884761036538	64 AP1	0 NA	347 ALX1
CORO2B	SRPK2	0.78	0.075	0.0961538	-3.37851	14	0.0352332448638412	0.972884761036538	62 AP2	554 AHR	553 AHR
GPR61	SRPK2	0.155	0.015	0.0967742	-3.36923	15	0.00734013883324566	0.972884761036538	56 AML1	429 AHR	449 AHR

Show entries

#When clicking the '' button in the last three column of the table, the users can view T(co)Fs supported by the ChIP-seq/motif data in red.

Function Analysis of Downstream Target Genes of YBX1

Upregulated.Pathways Downregulated.Pathways Global.Plots

Upstream Pathway Annotation of YBX1

From 1 to 6 results, Total 6 items

Search:

T(co)F	Pathway Name	Source	Gene Number
YBX1	Hs_Selenium_Metabolism_and_Selenoproteins_WP28_71888	WikiPathways	9
YBX1	U12 Dependent Splicing	Reactome	50
YBX1	Signaling events mediated by PTP1B	PID	53
YBX1	Hs_Brain-Derived_Neurotrophic_Factor_(BDNF)_signaling_pathway_WP2380_89803	WikiPathways	80
YBX1	IL2	NetPath	81
YBX1	pre-mRNA splicing	Reactome	135

Show entries

<
1
>

Target Gene Expression Analysis

Heatmap of Unsupervised Hierarchical Clustering Scatter Diagram of Differential Expression

Expression Atlas of YBX1

T(co)F Expression in Human Normal Tissues (GTEx) T(co)F Expression in Cancer Cell Lines (CCLE)

T(co)F Expression in Human Cancers (TCGA) T(co)F Expression in Encode Cell Lines