KnockTF-Search

T(co)F Overview

T(co)F:	Spdef
Species:	Mus musculus
Knock-Method:	knockout
T(co)F Class:	Tryptophan cluster factors
T(co)F Superclass:	Helix-turn-helix domains
Biosample Name:	Colon
Tissue Type:	Colon
Biosample Type:	Tissue
# of Control:	2
# of Treat:	2
Data Source:	GEO
Profile ID:	GSE20299
Platform:	GPL8759
Pubmed ID:	20801882

Spdef- Target Gene Network

T(co)F

up-regulated gene

down-regulated gene

#T(co)F-target relationships supported by the ChIP-seq data are represented by the thick lines

Gene Type: # of Top Genes:

Target Gene Information of Spdef

Showing 1 to 15 of 10,899 entries

Search:

Target Gene	T(co)F	Mean Expr. of Control	Mean Expr. of Treat	Fold Change	Log2FC	Rank	P-value	Corrected _P	Promoter _T(co)F	SE_T(co)F	TE_T(co)F

Target Gene	T(co)F	Mean Expr. of Control	Mean Expr. of Treat	Fold Change	Log2FC	Rank	P-value	Corrected _P	Promoter _T(co)F	SE_T(co)F	TE_T(co)F
Pdzk1	Spdef	2557.57	5.87086	0.00229548	-8.76699	1	0.274889463574687	0.997507742354799	133 Ar	253 Adnp	664 Spdef
Apoa1	Spdef	10262.5	29.0224	0.00282801	-8.46599	2	0.0930456366319031	0.997507742354799	314 Aebp2	796 Spdef	729 Spdef
Saa1	Spdef	28.6167	8728.68	305.02	8.25276	3	0.000155893843473597	0.679606640972918	72 Ar	675 Spdef	698 Spdef
Hoxb13	Spdef	3.49011	911.416	261.142	8.02869	4	0.250545686720552	0.997507742354799	176 Aebp2	584 Spdef	696 Spdef
Anpep	Spdef	6028.67	31.3047	0.00519264	-7.58932	5	0.111595380410578	0.997507742354799	117 Ar	726 Spdef	688 Spdef
Fabp6	Spdef	13466.2	74.1438	0.00550591	-7.5048	6	0.0679129846545717	0.997507742354799	86 Ar	735 Spdef	701 Spdef
2010106E10Rik	Spdef	4347.82	26.9937	0.00620856	-7.33152	7	0.177092614896433	0.997507742354799	29 Ar	0 Na	297 Spdef
Cyp3a11	Spdef	2231.54	15.0056	0.00672431	-7.2164	8	0.22185577498278	0.997507742354799	59 Ahr	116 Ahr	126 Ahr
Lgals2	Spdef	7886.54	68.5938	0.00869758	-6.84517	9	0.202511618886559	0.997507742354799	166 Arnt2	776 Spdef	760 Spdef
Apoa4	Spdef	985.882	9.00011	0.00912899	-6.77533	10	0.284494939564706	0.997507742354799	105 Ahr	796 Spdef	735 Spdef
Bcl2l15	Spdef	1469.1	16.6759	0.0113512	-6.46102	11	0.16803205506315	0.997507742354799	170 Ahr	774 Spdef	719 Spdef
Fgf15	Spdef	427.416	5.38725	0.0126042	-6.30995	12	0.304467545343732	0.997507742354799	287 Aebp2	880 Spdef	731 Adnp
Mttp	Spdef	2293.19	28.969	0.0126326	-6.3067	13	0.219346450944351	0.997507742354799	455 Aebp2	723 Spdef	713 Spdef
Ms4a10	Spdef	433.921	5.55255	0.0127962	-6.28814	14	0.399626471944418	0.997507742354799	184 Adnp	708 Spdef	716 Spdef
Slc26a6	Spdef	2179.1	32.9796	0.0151345	-6.04602	15	0.139389491167842	0.997507742354799	409 Aebp2	696 Spdef	661 Aebp2

Show entries

#When clicking the '' button in the last three column of the table, the users can view T(co)Fs supported by the ChIP-seq/motif data in red.

Function Analysis of Downstream Target Genes of Spdef

Upregulated.Pathways Downregulated.Pathways Global.Plots

Upstream Pathway Annotation of Spdef

Showing results 0 to 0, Total_ 0 _items

Search:

T(co)F	Pathway Name	Source	Gene Number
The data in the table is empty

Show entries

<
>

Target Gene Expression Analysis

Heatmap of Unsupervised Hierarchical Clustering Scatter Diagram of Differential Expression

Expression Atlas of Spdef

T(co)F Expression in Mouse Cell (Fantom5) T(co)F Expression in Mouse Tissue (Fantom5)