T(co)F Overview
T(co)F: Setdb1
Species: Mus musculus
Knock-Method: shRNA
T(co)F Class: Others
T(co)F Superclass: ENCODE_TF
Biosample Name: ES cells
Tissue Type: Embryo
Biosample Type: Cell line
# of Control: 6
# of Treat: 6
Data Source: GEO
Profile ID: GSE94444
Platform: GPL19057
Pubmed ID: 29351814

Setdb1- Target Gene Network

T(co)F   
up-regulated gene   
down-regulated gene   

#T(co)F-target relationships supported by the ChIP-seq data are represented by the thick lines

Gene Type: # of Top Genes:
Target Gene Information of Setdb1
Target Gene T(co)F Mean
Expr. of
Control 		Mean
Expr. of
Treat
Fold Change Log2FC Rank P-value Corrected
_P 		Promoter
_T(co)F 		SE_T(co)F TE_T(co)F
#When clicking the '' button in the last three column of the table, the users can view T(co)Fs supported by the ChIP-seq/motif data in red.
Function Analysis of Downstream Target Genes of Setdb1
Upstream Pathway Annotation of Setdb1
T(co)F Pathway Name Source Gene Number
Setdb1 PKMTS_METHYLATE_HISTONE_LYSINES REACTOME 67
Setdb1 CHROMATIN_MODIFYING_ENZYMES REACTOME 205
Target Gene Expression Analysis
Heatmap of Unsupervised Hierarchical Clustering Scatter Diagram of Differential Expression
Expression Atlas of Setdb1
T(co)F Expression in Mouse Cell (Fantom5) T(co)F Expression in Mouse Tissue (Fantom5)