Sample_11_0009 Mouse ENCODE Primary cell Embryo MEFs Sample_11_0015 Mouse ENCODE Stem cell Embryo ES-Bruce4 Sample_11_0018 Mouse ENCODE Stem cell Embryo ES-E14_encode Sample_12_0032 Mouse NCBI GEO/SRA Stem cell Embryo TSCs EsrrbOE Sample_12_0034 Mouse NCBI GEO/SRA In vitro differentiated cell Embryo Neural progenitor cells control Sample_12_0035 Mouse NCBI GEO/SRA In vitro differentiated cell Embryo Neural progenitor cells SrfOE Sample_12_0044 Mouse NCBI GEO/SRA Stem cell Embryo trophoblast stem cell line Sample_12_0051 Mouse NCBI GEO/SRA Cell line Embryo NIH/3T3 Sample_12_0065 Mouse NCBI GEO/SRA Primary cell Embryo MEFs_AGHMT_reprogramming Sample_12_0066 Mouse NCBI GEO/SRA Primary cell Embryo MEFs Akt1_reprogramming Sample_12_0067 Mouse NCBI GEO/SRA Primary cell Embryo MEFs cardiogenic TFs GATA4_reprogramming Sample_12_0068 Mouse NCBI GEO/SRA Primary cell Embryo MEFs Hand2_reprogramming Sample_12_0069 Mouse NCBI GEO/SRA Primary cell Embryo MEFs cardiogenic TFs Mef2c_reprogramming Sample_12_0070 Mouse NCBI GEO/SRA Primary cell Embryo MEFs cardiogenic TFs Tbx5_reprogramming Sample_12_0079 Mouse NCBI GEO/SRA Primary cell Embryo MEFs_noDOX Sample_12_0080 Mouse NCBI GEO/SRA Primary cell Embryo MEFs doxycycline ascorbic acid DAY3 Sample_12_0081 Mouse NCBI GEO/SRA Primary cell Embryo MEFs doxycycline ascorbic acid DAY6 SSEA+ Sample_12_0082 Mouse NCBI GEO/SRA Primary cell Embryo MEFs doxycycline ascorbic acid DAY9 SSEA+ Sample_12_0083 Mouse NCBI GEO/SRA Stem cell Embryo ESCs V6.5 Sample_12_0089 Mouse NCBI GEO/SRA Stem cell Embryo ESCs H33 WT Sample_12_0090 Mouse NCBI GEO/SRA Stem cell Embryo ESCs H33 KO Sample_12_0091 Mouse NCBI GEO/SRA Stem cell Embryo ESCs HIRA WT Sample_12_0092 Mouse NCBI GEO/SRA Stem cell Embryo ESCs HIRA KO Sample_12_0093 Mouse NCBI GEO/SRA Stem cell Embryo ESCs ATRX DAXX WT Sample_12_0094 Mouse NCBI GEO/SRA Stem cell Embryo ESCs ATRX KO Sample_12_0095 Mouse NCBI GEO/SRA Stem cell Embryo ESCs DAXX KO Sample_12_0096 Mouse NCBI GEO/SRA Tissue Embryo Embryoid Bodies H33 WT Sample_12_0097 Mouse NCBI GEO/SRA Tissue Embryo Embryoid Bodies H33 KO Sample_12_0100 Mouse NCBI GEO/SRA Stem cell Embryo ESCs Chr4-cl WT Sample_12_0101 Mouse NCBI GEO/SRA Stem cell Embryo ESCs Chr4-cl KO Sample_12_0104 Mouse NCBI GEO/SRA Stem cell Embryo "R1 Dendra2-RPB1,Halo-MED19 ES" Sample_12_0105 Mouse NCBI GEO/SRA Stem cell Embryo R1 WT EpiLC Sample_12_0106 Mouse NCBI GEO/SRA Stem cell Embryo "R1 Dendra2-RPB1,Halo-MED19 EpiLC" Sample_12_0107 Mouse NCBI GEO/SRA Stem cell Embryo R1 WT ES Sample_12_0113 Mouse NCBI GEO/SRA Stem cell Embryo DKI ESCs Foxa2-Venus-neg/Sox17-Cherry-neg d0 Sample_12_0114 Mouse NCBI GEO/SRA Stem cell Embryo DKI ESCs Foxa2-Venus-pos/Sox17-Cherry-neg d3 Sample_12_0115 Mouse NCBI GEO/SRA Stem cell Embryo DKI ESCs Foxa2-Venus-pos/Sox17-Cherry-pos d5 Sample_12_0116 Mouse NCBI GEO/SRA Stem cell Embryo TXY Xistèž–A Sample_12_0117 Mouse NCBI GEO/SRA Stem cell Embryo TXY XistWT Sample_12_0121 Mouse NCBI GEO/SRA Stem cell Embryo TX1072 Hdac3KO Dox 0h Sample_12_0122 Mouse NCBI GEO/SRA Stem cell Embryo TX1072 Hdac3KO Dox 8h Sample_12_0126 Mouse NCBI GEO/SRA Stem cell Embryo E14Tg2a treat 0h Sample_12_0127 Mouse NCBI GEO/SRA Stem cell Embryo E14Tg2a treat 1h Sample_12_0128 Mouse NCBI GEO/SRA Stem cell Embryo E14Tg2a treat 6h Sample_12_0129 Mouse NCBI GEO/SRA Stem cell Embryo E14Tg2a treat 12h Sample_12_0130 Mouse NCBI GEO/SRA Stem cell Embryo E14Tg2a treat 24h Sample_12_0131 Mouse NCBI GEO/SRA Stem cell Embryo E14Tg2a treat 36h Sample_12_0132 Mouse NCBI GEO/SRA Stem cell Embryo E14Tg2a treat 48h Sample_12_0133 Mouse NCBI GEO/SRA Stem cell Embryo E14Tg2a treat 72h Sample_12_0151 Mouse NCBI GEO/SRA Stem cell Embryo ESCs d6 Sample_12_0158 Mouse NCBI GEO/SRA Primary cell Embryo MEFs_p2 Sample_12_0177 Mouse NCBI GEO/SRA Stem cell Embryo E14_dCas9-KRAB_empty Sample_12_0209 Mouse NCBI GEO/SRA Stem cell Embryo J1 Zscan4 OE Sample_12_0217 Mouse NCBI GEO/SRA Stem cell Embryo ESCs PDGFRä¼?FLK1- sorted day4 of differentiation Sample_12_0218 Mouse NCBI GEO/SRA Stem cell Embryo ESCs PDGFRä¼?FLK1- sorted day4 of differentiation dox d1 Sample_12_0219 Mouse NCBI GEO/SRA Tissue Embryo MEFs flagAscl Sample_12_0220 Mouse NCBI GEO/SRA Tissue Embryo MEFs flagMyod1 Sample_12_0221 Mouse NCBI GEO/SRA Tissue Embryo MEFs rtTA Sample_12_0236 Mouse NCBI GEO/SRA Stem cell Embryo ESCs Esrrb WT Sample_12_0237 Mouse NCBI GEO/SRA Stem cell Embryo ESCs Esrrb KO Sample_12_0256 Mouse NCBI GEO/SRA Stem cell Embryo RGd2 Sample_12_0257 Mouse NCBI GEO/SRA Stem cell Embryo RGd2 32h N2B27 Sample_12_0258 Mouse NCBI GEO/SRA Stem cell Embryo ESCs WT Sample_12_0259 Mouse NCBI GEO/SRA Stem cell Embryo ESCs Dnttip1 KO2 Sample_12_0296 Mouse NCBI GEO/SRA Stem cell Embryo E14_WT Sample_12_0297 Mouse NCBI GEO/SRA Stem cell Embryo E14 Pml-/- Sample_12_0310 Mouse NCBI GEO/SRA Stem cell Embryo ESCs DnmtDKO Sample_12_0311 Mouse NCBI GEO/SRA Stem cell Embryo ESCs DnmtTKO Sample_12_0312 Mouse NCBI GEO/SRA Stem cell Embryo ESCs G9a-/- Tg Sample_12_0313 Mouse NCBI GEO/SRA Stem cell Embryo ESCs G9a-/-_GLP-/- Sample_12_0314 Mouse NCBI GEO/SRA Stem cell Embryo ESCs WT Sample_12_0322 Mouse NCBI GEO/SRA Stem cell Embryo Hepatic stellate cells isolated from mouse liver Sample_12_0343 Mouse NCBI GEO/SRA Stem cell Embryo E14 Control Sample_12_0344 Mouse NCBI GEO/SRA Stem cell Embryo F123 mouse ES cell auxin_0hr Sample_12_0345 Mouse NCBI GEO/SRA Stem cell Embryo F123 mouse ES cell auxin_24hr Sample_12_0346 Mouse NCBI GEO/SRA Stem cell Embryo F123 mouse ES cell auxin_48hr Sample_12_0363 Mouse NCBI GEO/SRA Cell line Embryo C3H10T1/2 control Sample_12_0377 Mouse NCBI GEO/SRA Stem cell Embryo ES-E14 Sample_12_0378 Mouse NCBI GEO/SRA Primary cell Embryo NIH-3T3 Sample_12_0379 Mouse NCBI GEO/SRA Stem cell Embryo E14Tg2A Sample_12_0395 Mouse NCBI GEO/SRA Stem cell Embryo ESCs EZH +/- Sample_12_0396 Mouse NCBI GEO/SRA Stem cell Embryo ESCs EZH +/- + WT EZH2 Sample_12_0420 Mouse NCBI GEO/SRA Tissue Embryo embryo otic region E10.5 Sample_12_0424 Mouse NCBI GEO/SRA Stem cell Embryo ESC auxin 8h Sample_12_0425 Mouse NCBI GEO/SRA Stem cell Embryo ESC DMSO 8h Sample_12_0432 Mouse NCBI GEO/SRA Primary cell Embryo 3T3 fibroblasts unstim Sample_12_0433 Mouse NCBI GEO/SRA Primary cell Embryo 3T3 fibroblasts stim TNF-alpha 2h Sample_12_0434 Mouse NCBI GEO/SRA Cell line Embryo P19.6 Untreated Sample_12_0435 Mouse NCBI GEO/SRA Cell line Embryo P19.6 RA-treated Sample_12_0439 Mouse NCBI GEO/SRA Stem cell Embryo ESC_Control Sample_12_0440 Mouse NCBI GEO/SRA Stem cell Embryo ESC_H33KD1 Sample_12_0451 Mouse NCBI GEO/SRA Primary cell Embryo MEFs Sample_12_0452 Mouse NCBI GEO/SRA Stem cell Embryo Brg1f/f_ Actin-CreER WT Sample_12_0453 Mouse NCBI GEO/SRA Stem cell Embryo Brg1f/f_ Actin-CreER brg1 Deleted Sample_12_0458 Mouse NCBI GEO/SRA Stem cell Embryo ESCs tet2-/- Sample_12_0459 Mouse NCBI GEO/SRA Stem cell Embryo ESCs WT differentiation d3 Sample_12_0460 Mouse NCBI GEO/SRA Stem cell Embryo ESCs tet2-/- differentiation d3 Sample_12_0472 Mouse NCBI GEO/SRA Stem cell Embryo ESCs MLL3-/-_MLL4flox/flox Sample_12_0473 Mouse NCBI GEO/SRA Stem cell Embryo ESCs MLL3-/-_MLL4-/- Sample_12_0474 Mouse NCBI GEO/SRA Stem cell Embryo Differentiated embryoid body at d4 MLL3-/-_MLL4flox/flox Sample_12_0475 Mouse NCBI GEO/SRA Stem cell Embryo Differentiated embryoid body at d4 MLL3-/-_MLL4-/- Sample_12_0476 Mouse NCBI GEO/SRA Primary cell Embryo cultured trophoblast giant cells Sample_12_0500 Mouse NCBI GEO/SRA Stem cell Embryo R1 ES shLuc Sample_12_0501 Mouse NCBI GEO/SRA Stem cell Embryo shKdm5b R1 ES Sample_12_0506 Mouse NCBI GEO/SRA Primary cell Embryo EpiLC_plusActivin Sample_12_0507 Mouse NCBI GEO/SRA Primary cell Embryo EpiLC_minusActivin Sample_12_0508 Mouse NCBI GEO/SRA Stem cell Embryo EpiSC9 Sample_12_0509 Mouse NCBI GEO/SRA Stem cell Embryo E14.1 Sall4flox/- Sample_12_0510 Mouse NCBI GEO/SRA Stem cell Embryo E14.1 Sall4 delta/- Sample_12_0514 Mouse NCBI GEO/SRA Tissue Embryo embryonic cells WT Sample_12_0515 Mouse NCBI GEO/SRA Tissue Embryo embryonic cells Ezh2-/- Sample_12_0524 Mouse NCBI GEO/SRA Stem cell Embryo V6.5_NonT Sample_12_0532 Mouse NCBI GEO/SRA Stem cell Embryo ESCs E3.5 Sample_12_0534 Mouse NCBI GEO/SRA Stem cell Embryo V6.5 Sample_12_0565 Mouse NCBI GEO/SRA Stem cell Embryo V6.5 PRDM14 dC2 Sample_12_0566 Mouse NCBI GEO/SRA Stem cell Embryo V6.5 PRDM14 dC1 Sample_12_0567 Mouse NCBI GEO/SRA Stem cell Embryo V6.5 PRDM14 dC5 Sample_12_0568 Mouse NCBI GEO/SRA Stem cell Embryo V6.5 PRDM14 dC3 Sample_12_0569 Mouse NCBI GEO/SRA Stem cell Embryo V6.5 Sample_12_0582 Mouse NCBI GEO/SRA Primary cell Embryo MEFs prior to induction Sample_12_0583 Mouse NCBI GEO/SRA Primary cell Embryo MEFs reprogramming intermediate d1 Sample_12_0584 Mouse NCBI GEO/SRA Primary cell Embryo MEFs reprogramming intermediate d3 Sample_12_0585 Mouse NCBI GEO/SRA Primary cell Embryo MEFs reprogramming intermediate d5 Sample_12_0586 Mouse NCBI GEO/SRA Primary cell Embryo MEFs reprogramming intermediate d7 Sample_12_0587 Mouse NCBI GEO/SRA Primary cell Embryo MEFs reprogramming intermediate d11 Sample_12_0588 Mouse NCBI GEO/SRA Primary cell Embryo MEFs reprogramming intermediate d15 Sample_12_0589 Mouse NCBI GEO/SRA Primary cell Embryo MEFs reprogramming intermediate d18 Sample_12_0591 Mouse NCBI GEO/SRA Primary cell Embryo MEFs WT Sample_12_0594 Mouse NCBI GEO/SRA Primary cell Embryo "ES derived mesoderm _Bry.GFP+,FLK1-_" Sample_12_0595 Mouse NCBI GEO/SRA Primary cell Embryo "ES derived Hemangioblasts _Bry.GFP+,FLK1+_" Sample_12_0596 Mouse NCBI GEO/SRA Primary cell Embryo "ES derived Hemogenic endothelium _Bry.GFP+,Tie2+/Ckit+/CD41-_" Sample_12_0597 Mouse NCBI GEO/SRA Primary cell Embryo ES derived Macrophages _CD11b+_ Sample_12_0602 Mouse NCBI GEO/SRA Cell line Embryo P19 Sample_12_0603 Mouse NCBI GEO/SRA Stem cell Embryo Embryonic stem cell Sample_12_0605 Mouse NCBI GEO/SRA Stem cell Embryo TKS185 E14 WT Sample_12_0606 Mouse NCBI GEO/SRA Stem cell Embryo TKS185 E14 Tip5 KD Sample_12_0614 Mouse NCBI GEO/SRA Primary cell Embryo MEFs_Smarca4-KO Sample_12_0615 Mouse NCBI GEO/SRA Primary cell Embryo MEFs_Smarcb1-KO Sample_12_0616 Mouse NCBI GEO/SRA Primary cell Embryo MEFs_WT Sample_12_0619 Mouse NCBI GEO/SRA Stem cell Embryo ESCs E14 serum Sample_12_0620 Mouse NCBI GEO/SRA Stem cell Embryo ESCs E14 2i Sample_12_0624 Mouse NCBI GEO/SRA Stem cell Embryo E14 Sample_12_0638 Mouse NCBI GEO/SRA Stem cell Embryo E14 WT Sample_12_0639 Mouse NCBI GEO/SRA Stem cell Embryo E14 Mll3-/- Mll4-/- Sample_12_0640 Mouse NCBI GEO/SRA Stem cell Embryo E14 WT D0 Sample_12_0641 Mouse NCBI GEO/SRA Stem cell Embryo E14 WT D1 Sample_12_0642 Mouse NCBI GEO/SRA Stem cell Embryo E14 WT D1.5 Sample_12_0643 Mouse NCBI GEO/SRA Stem cell Embryo E14 WT D2 Sample_12_0644 Mouse NCBI GEO/SRA Stem cell Embryo E14 WT D2.5 Sample_12_0645 Mouse NCBI GEO/SRA Stem cell Embryo E14 WT D3 Sample_12_0646 Mouse NCBI GEO/SRA Stem cell Embryo E14 Mll3/4 DKO D0 Sample_12_0647 Mouse NCBI GEO/SRA Stem cell Embryo E14 Mll3/4 DKO D1 Sample_12_0648 Mouse NCBI GEO/SRA Stem cell Embryo E14 Mll3/4 DKO D1.5 Sample_12_0649 Mouse NCBI GEO/SRA Stem cell Embryo E14 Mll3/4 DKO D2 Sample_12_0650 Mouse NCBI GEO/SRA Stem cell Embryo E14 Mll3/4 DKO D3 Sample_12_0663 Mouse NCBI GEO/SRA Stem cell Embryo C3H10T1/2 differentiation d3 Sample_12_0664 Mouse NCBI GEO/SRA Stem cell Embryo C3H10T1/2 differentiation d0 Sample_12_0665 Mouse NCBI GEO/SRA Stem cell Embryo "C3H10T1/2 differentiation d0,6h" Sample_12_0666 Mouse NCBI GEO/SRA Stem cell Embryo C3H10T1/2 differentiation d2 Sample_12_0667 Mouse NCBI GEO/SRA Stem cell Embryo C3H10T1/2 differentiation d7 Sample_12_0681 Mouse NCBI GEO/SRA Stem cell Embryo ESCs WT Sample_12_0682 Mouse NCBI GEO/SRA Stem cell Embryo mESC-derived neuron WT Sample_12_0683 Mouse NCBI GEO/SRA Cell line Embryo P19 Untreated Sample_12_0684 Mouse NCBI GEO/SRA Cell line Embryo P19 SB-431542 Sample_12_0685 Mouse NCBI GEO/SRA Cell line Embryo P19 Activin 1h Sample_12_0686 Mouse NCBI GEO/SRA Cell line Embryo P19 Activin 4h Sample_12_0687 Mouse NCBI GEO/SRA Cell line Embryo P19 Activin 8h Sample_12_0697 Mouse NCBI GEO/SRA Stem cell Embryo ESCs MLL3/4 DKO Sample_12_0698 Mouse NCBI GEO/SRA Stem cell Embryo ESCs WT Sample_12_0699 Mouse NCBI GEO/SRA Stem cell Embryo R1 ESC WT Sample_12_0700 Mouse NCBI GEO/SRA Stem cell Embryo R1 ESC MLL3/4 double catalytic dead Sample_12_0717 Mouse NCBI GEO/SRA Primary cell Embryo P19 EC cells UT Sample_12_0718 Mouse NCBI GEO/SRA Primary cell Embryo P19 EC cells RA 6h Sample_12_0719 Mouse NCBI GEO/SRA Primary cell Embryo P19 EC cells RA 12h Sample_12_0720 Mouse NCBI GEO/SRA Primary cell Embryo P19 EC cells RA 18h Sample_12_0721 Mouse NCBI GEO/SRA Primary cell Embryo P19 EC cells RA 24h Sample_12_0722 Mouse NCBI GEO/SRA Primary cell Embryo P19 EC cells RA 48h Sample_12_0729 Mouse NCBI GEO/SRA Stem cell Embryo HapES cells _AN3-12_ Sample_12_0732 Mouse NCBI GEO/SRA Tissue Embryo E9.5 embryo anterior Sample_12_0733 Mouse NCBI GEO/SRA Tissue Embryo E9.5 embryo tailbud Sample_12_0742 Mouse NCBI GEO/SRA Primary cell Embryo embryonic fibroblast Kap1 KO Sample_12_0743 Mouse NCBI GEO/SRA Primary cell Embryo embryonic fibroblast WT Kap1 loxP/loxP Sample_12_0747 Mouse NCBI GEO/SRA Induced pluripotent stem cell line Embryo MEF-derived iPS cells Sample_12_0756 Mouse NCBI GEO/SRA Primary cell Embryo MEFs Sample_12_0757 Mouse NCBI GEO/SRA Primary cell Embryo pre-iPSC line 1 Sample_12_0758 Mouse NCBI GEO/SRA Stem cell Embryo ESC Sample_12_0767 Mouse NCBI GEO/SRA Stem cell Embryo ESCs E14 Sample_12_0771 Mouse NCBI GEO/SRA Stem cell Embryo ESCs E3.5 ASYN Sample_12_0772 Mouse NCBI GEO/SRA Stem cell Embryo ESCs E3.5 MIT Sample_12_0796 Mouse NCBI GEO/SRA Stem cell Embryo ESCs Chd2KO Sample_12_0806 Mouse NCBI GEO/SRA Stem cell Embryo dox+ ctrl SA-tTA-Ascl1 ESCs Sample_12_0807 Mouse NCBI GEO/SRA Stem cell Embryo dox- 24h ind SA-tTA-Ascl1 ESCs Sample_12_0808 Mouse NCBI GEO/SRA Stem cell Embryo dox+ ctrl SA-tTA-Ascl2 ESCs Sample_12_0809 Mouse NCBI GEO/SRA Stem cell Embryo dox- 24h ind SA-tTA-MyoD ESCs Sample_12_0815 Mouse NCBI GEO/SRA Stem cell Embryo R1 ESC WT Sample_12_0816 Mouse NCBI GEO/SRA Stem cell Embryo R1 ESC Mll3/4 dKO Sample_12_0817 Mouse NCBI GEO/SRA Stem cell Embryo R1 ESC Mll3/4 dCD Sample_12_0818 Mouse NCBI GEO/SRA Primary cell Embryo Day 0 MEF cell Sample_12_0819 Mouse NCBI GEO/SRA Primary cell Embryo Day 2 SKM secondary MEF Sample_12_0820 Mouse NCBI GEO/SRA Primary cell Embryo embryonic fibroblasts E13.5 WT Sample_12_0821 Mouse NCBI GEO/SRA Stem cell Embryo ESCs WT Sample_12_0822 Mouse NCBI GEO/SRA Primary cell Embryo embryonic fibroblasts E13.5 shCtrl Sample_12_0823 Mouse NCBI GEO/SRA Stem cell Embryo ESCs shCtrl Sample_14_0015 Mouse NGDC GSA Stem cell Embryo ESCs Sample_14_0016 Mouse NGDC GSA Stem cell Embryo ESCs