Species: | |
Biosample type: | |
Tissue type: | |
Data source: | |
Biosample name: | |
Sample ID: | Sample_02_018?cell_id=SE_02_018 |
SE ID | SE Region | Size | Rank | Element | SNP | Enhancer | TFBS | DHS | Gene |
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Case ID: | Name: |
Input ID: | Name: |
Common SNP: | dbSNP |
eQTL: | GTEx, HaploReg v4.1, PancanQTL |
Risk SNP : | GWAS Catalog, GWASdb v2.0 |
TFBS: | TFBS Conserved of UCSC |
CRISPR/Cas9 target site: | CRISPR Targets of UCSC |
Read Mapping: | bowtie(v2.4.4) -p 10 -x -S -U |
Peak Calling: | macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto |
Stitching Distance: | 12.5 kb |
TSS Exclusive Zone: | +/- 2 kb |