cell_id Species cell_source cell_type cell_name cell_state Sample_01_0034 Human ENCODE Cell line Colon HCT116 Sample_02_0021 Human NCBI GEO/SRA Cell line Colon V429 Sample_02_0053 Human NCBI GEO/SRA Cell line Colon DKO1 Sample_02_0141 Human NCBI GEO/SRA Cell line Colon HCT116_Heterozygous_ARID1A-KO Sample_02_0142 Human NCBI GEO/SRA Cell line Colon HCT116_Homozygous_ARID1A-KO Sample_02_0143 Human NCBI GEO/SRA Cell line Colon HCT116_Parental Sample_02_0236 Human NCBI GEO/SRA Cell line Colon V206 Sample_02_0237 Human NCBI GEO/SRA Cell line Colon V389 Sample_02_0240 Human NCBI GEO/SRA Cell line Colon V429_2 Sample_02_0241 Human NCBI GEO/SRA Cell line Colon V456 Sample_02_0242 Human NCBI GEO/SRA Cell line Colon V481 Sample_02_0322 Human NCBI GEO/SRA Cell line Colon Caco-2 Sample_02_0323 Human NCBI GEO/SRA Cell line Colon RKO Sample_02_0324 Human NCBI GEO/SRA Cell line Colon SW48 Sample_02_0352 Human NCBI GEO/SRA Cell line Colon HCT116 Sample_02_0353 Human NCBI GEO/SRA Cell line Colon HT29 Sample_02_0354 Human NCBI GEO/SRA Cell line Colon Colo205 Sample_02_0355 Human NCBI GEO/SRA Cell line Colon HCT15 Sample_02_0356 Human NCBI GEO/SRA Cell line Colon Sw480 Sample_02_0357 Human NCBI GEO/SRA Cell line Colon Colo320 Sample_02_0358 Human NCBI GEO/SRA Cell line Colon LS180 Sample_02_0359 Human NCBI GEO/SRA Cell line Colon Colo741 Sample_02_0361 Human NCBI GEO/SRA Cell line Colon HT29_DMSO Sample_02_0424 Human NCBI GEO/SRA Cell line Colon SW620 Sample_02_0426 Human NCBI GEO/SRA Cell line Colon HCT116_NONT Sample_02_0427 Human NCBI GEO/SRA Cell line Colon HCT116_shPAF1 Sample_01_0099 Human ENCODE Tissue Colon transverse colon Sample_01_0109 Human ENCODE Tissue Colon transverse colon_54y Sample_01_0114 Human ENCODE Cell line Colon HCT116_encode Sample_02_0458 Human NCBI GEO/SRA Cell line Colon HCT116 DMSO Sample_02_0477 Human NCBI GEO/SRA Primary cell Colon intestinal epithelial organoids_139a Sample_02_0478 Human NCBI GEO/SRA Tissue Colon normal colon mucosa Sample_02_0521 Human NCBI GEO/SRA Cell line Colon SW480 Sample_02_0522 Human NCBI GEO/SRA Cell line Colon SW620 Sample_02_0598 Human NCBI GEO/SRA Cell line Colon HCT116 TP53-/-_Nutlin3A Sample_02_0599 Human NCBI GEO/SRA Cell line Colon HCT116_DMSO Sample_02_0607 Human NCBI GEO/SRA Cell line Colon HCT116 TP53-/-_Nutlin-3A Sample_02_0608 Human NCBI GEO/SRA Cell line Colon HCT116_Nutlin-3A Sample_02_0870 Human NCBI GEO/SRA Cell line Colon HCT116_GLIS2.1-DMSO Sample_02_0871 Human NCBI GEO/SRA Cell line Colon HCT116_GLIS2.2-DMSO Sample_02_0872 Human NCBI GEO/SRA Cell line Colon HCT116_siCtrl-5FU Sample_02_0873 Human NCBI GEO/SRA Cell line Colon HCT116_siGLIS2.1-5FU Sample_02_0874 Human NCBI GEO/SRA Cell line Colon HCT116_siGLIS2.2-5FU Sample_02_0884 Human NCBI GEO/SRA Cell line Colon LoVo Sample_02_1029 Human NCBI GEO/SRA Cell line Colon HCT116 Sample_02_1030 Human NCBI GEO/SRA Cell line Colon DKO Sample_02_1247 Human NCBI GEO/SRA Cell line Colon HCT116_IFN-beta_1h Sample_02_1323 Human NCBI GEO/SRA Cell line Colon DLD1_WT Sample_02_1395 Human NCBI GEO/SRA Primary cell Colon COLO320-DM_DMSO Sample_02_1396 Human NCBI GEO/SRA Primary cell Colon COLO320HSR_DMSO Sample_02_1411 Human NCBI GEO/SRA Cell line Colon KM12C Sample_02_1640 Human NCBI GEO/SRA Cell line Colon HCT116_Nut0h_BR1 DMSO Sample_02_1641 Human NCBI GEO/SRA Cell line Colon HCT116_Nut0h_BR2 DMSO Sample_02_1642 Human NCBI GEO/SRA Cell line Colon HCT116_Nut1h_BR1 Nutlin3a 1h Sample_02_1643 Human NCBI GEO/SRA Cell line Colon HCT116_Nut1h_BR2 Nutlin3a 1h Sample_02_1644 Human NCBI GEO/SRA Cell line Colon HCT116_Nut10h_BR1 Nutlin3a 10h Sample_02_1645 Human NCBI GEO/SRA Cell line Colon HCT116_Nut10h_BR2 Nutlin3a 10h Sample_02_1646 Human NCBI GEO/SRA Cell line Colon HCT116_RAD21_Nut0h_BR1 DMSO Sample_02_1647 Human NCBI GEO/SRA Cell line Colon HCT116_RAD21_Nut0h_BR2 DMSO Sample_02_1648 Human NCBI GEO/SRA Cell line Colon HCT116_RAD21_Nut1h_BR1 Nutlin3a 1h Sample_02_1649 Human NCBI GEO/SRA Cell line Colon HCT116_RAD21_Nut1h_BR2 Nutlin3a 1h Sample_02_1672 Human NCBI GEO/SRA Cell line Colon CTRL [DLD-1] Sample_02_1673 Human NCBI GEO/SRA Cell line Colon OXA [DLD-1] Sample_02_1674 Human NCBI GEO/SRA Cell line Colon Palb [DLD-1] Sample_02_1675 Human NCBI GEO/SRA Cell line Colon Comb [DLD-1] Sample_02_1686 Human NCBI GEO/SRA Cell line Colon HCT116 ENL-AID ctrl Sample_02_1687 Human NCBI GEO/SRA Cell line Colon HCT116 ENL-AID IAA Sample_02_1688 Human NCBI GEO/SRA Cell line Colon HCT116 ENL-AID IAA washout Sample_02_1701 Human NCBI GEO/SRA Cell line Colon HCT116 parental_ChIP_Fig4 Sample_02_1702 Human NCBI GEO/SRA Cell line Colon HCT116 KI1_ChIP_Fig4 Sample_02_1826 Human NCBI GEO/SRA Cell line Colon DLD-1 GFP sg1 Sample_02_1827 Human NCBI GEO/SRA Cell line Colon DLD-1 p300 TAZ2 sg1 Sample_02_1828 Human NCBI GEO/SRA Cell line Colon DLD-1 p300 TAZ2 sg2 Sample_02_1829 Human NCBI GEO/SRA Cell line Colon DLD-1 p300 HAT sg1 Sample_02_1830 Human NCBI GEO/SRA Cell line Colon DLD-1 CBP TAZ2 sg1 Sample_02_1831 Human NCBI GEO/SRA Cell line Colon DLD-1 CBP TAZ2 sg2 Sample_02_1832 Human NCBI GEO/SRA Cell line Colon DLD-1 CBP HAT sg1 Sample_02_1869 Human NCBI GEO/SRA Cell line Colon HCT116 Control Sample_02_1870 Human NCBI GEO/SRA Cell line Colon HCT116 FOXD2 Sample_02_1885 Human NCBI GEO/SRA Cell line Colon 220317_HCT116_untreated_S20 Sample_02_1944 Human NCBI GEO/SRA Cell line Colon C1,CST Sample_02_2055 Human NCBI GEO/SRA Cell line Colon HCT116_WT Sample_02_2056 Human NCBI GEO/SRA Cell line Colon HCT116_D1KO Sample_02_2063 Human NCBI GEO/SRA Cell line Colon SW480 cells, WT Sample_02_2064 Human NCBI GEO/SRA Cell line Colon SW480 cells, D1KO Sample_02_2065 Human NCBI GEO/SRA Cell line Colon HCT116 Sample_02_2131 Human NCBI GEO/SRA Cell line Colon HCT116 Sample_02_2147 Human NCBI GEO/SRA Cell line Colon HCT116 cells Sample_02_2148 Human NCBI GEO/SRA Cell line Colon HCT116 cells (SAE2-kd) Doxycyclin 1ug/mL for 5 days Sample_02_2164 Human NCBI GEO/SRA Cell line Colon Normoxia - No Bacteria (NN) Sample_02_2165 Human NCBI GEO/SRA Cell line Colon Normoxia - infection with E. coli (NE) Sample_02_2166 Human NCBI GEO/SRA Cell line Colon Normoxia - infection with Fnn (NF) Sample_02_2167 Human NCBI GEO/SRA Cell line Colon Hypoxia - No Bacteria (HN) Sample_02_2168 Human NCBI GEO/SRA Cell line Colon Hypoxia - infection with E. coli (HE) Sample_02_2169 Human NCBI GEO/SRA Cell line Colon Hypoxia - infection with Fnn (HF) Sample_02_2516 Human NCBI GEO/SRA Tissue Colon 17627N Sample_02_2517 Human NCBI GEO/SRA Tissue Colon 17753T Sample_02_2518 Human NCBI GEO/SRA Tissue Colon 17753N Sample_02_2519 Human NCBI GEO/SRA Tissue Colon 17787T Sample_02_2520 Human NCBI GEO/SRA Tissue Colon 18081T Sample_02_2521 Human NCBI GEO/SRA Tissue Colon 18081N Sample_02_2522 Human NCBI GEO/SRA Tissue Colon 18481T Sample_02_2523 Human NCBI GEO/SRA Tissue Colon 18481N Sample_02_2524 Human NCBI GEO/SRA Tissue Colon 18607T Sample_02_2525 Human NCBI GEO/SRA Tissue Colon 18607N Sample_02_2526 Human NCBI GEO/SRA Tissue Colon 18739T Sample_02_2527 Human NCBI GEO/SRA Tissue Colon 18739N Sample_02_2528 Human NCBI GEO/SRA Tissue Colon 18810T Sample_02_2529 Human NCBI GEO/SRA Tissue Colon 18810N Sample_02_2530 Human NCBI GEO/SRA Tissue Colon 18946T Sample_02_2531 Human NCBI GEO/SRA Tissue Colon 18946N Sample_02_2532 Human NCBI GEO/SRA Tissue Colon 19106T Sample_02_2533 Human NCBI GEO/SRA Tissue Colon 19106N Sample_02_2534 Human NCBI GEO/SRA Tissue Colon 19282T Sample_02_2535 Human NCBI GEO/SRA Tissue Colon 19282N Sample_02_2536 Human NCBI GEO/SRA Tissue Colon 19342T Sample_02_2537 Human NCBI GEO/SRA Tissue Colon 19342N Sample_02_2538 Human NCBI GEO/SRA Tissue Colon 19395T Sample_02_2539 Human NCBI GEO/SRA Tissue Colon 19395N Sample_02_2540 Human NCBI GEO/SRA Tissue Colon 19441T Sample_02_2541 Human NCBI GEO/SRA Tissue Colon 19441N Sample_02_2542 Human NCBI GEO/SRA Tissue Colon 19442T Sample_02_2543 Human NCBI GEO/SRA Tissue Colon 19442N Sample_02_2544 Human NCBI GEO/SRA Tissue Colon HT29 xenograft tumor Sample_02_2594 Human NCBI GEO/SRA Cell line Colon RKO_shZNF280C-DOX Sample_02_2595 Human NCBI GEO/SRA Cell line Colon RKO_shZNF280C Sample_02_2679 Human NCBI GEO/SRA Cell line Colon Auxin- rep1 Sample_02_2680 Human NCBI GEO/SRA Cell line Colon Auxin+ rep1 Sample_02_2711 Human NCBI GEO/SRA Cell line Colon HCT116 Sample_02_2712 Human NCBI GEO/SRA Cell line Colon CT116OxR Sample_02_2713 Human NCBI GEO/SRA Cell line Colon DMSO-3h_SPT5-N-PURO-Fkbp12_DLD1_rep1 Sample_02_2714 Human NCBI GEO/SRA Cell line Colon dTAG-3h_SPT5-N-PURO-Fkbp12_DLD1_rep1 Sample_02_2855 Human NCBI GEO/SRA Cell line Colon HCT116 Sample_02_2856 Human NCBI GEO/SRA Cell line Colon DKO-C1 Sample_02_2912 Human NCBI GEO/SRA Cell line Colon GFP_dox_pos_rep1 Sample_02_2913 Human NCBI GEO/SRA Cell line Colon M303_dox_neg_rep1 Sample_02_2914 Human NCBI GEO/SRA Cell line Colon M303_dox_pos_rep1 Sample_02_2915 Human NCBI GEO/SRA Cell line Colon SOX9_dox_neg_rep1 Sample_02_2916 Human NCBI GEO/SRA Cell line Colon SOX9_dox_pos_rep1 Sample_02_2926 Human NCBI GEO/SRA Cell line Colon KM12C Sample_02_2927 Human NCBI GEO/SRA Cell line Colon KM12SM Sample_02_3097 Human NCBI GEO/SRA Cell line Colon WT Sample_02_3112 Human NCBI GEO/SRA Tissue Colon 17627T ChIP-seq Sample_02_3152 Human NCBI GEO/SRA cell line Colon DLD1 Tet-inducible dominant negative TCF7L2 Sample_02_3153 Human NCBI GEO/SRA cell line Colon DLD1 Tet-inducible dominant negative TCF7L2 DOX Sample_01_0121 Human ENCODE cell line Colon HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens BRD4