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Function introduction:
Users submit a TF name and ATACdb will identify the accessibile chromatin regions bound by the TF and their associated samples. TF related accessible chromatin regions are identified under two strategies：TF footprint and motif scan.
Parameter explanation:
1) TF name: TF official name.
Function introduction:
Users submit a gene name and ATACdb will identify accessible chromatin regions associated with it via relationships between the accessible chromatin regions and associated genes, which are identified under different strategies.
Parameter explanation:
1) Strategies/Algorithm: Proximal, closest and overlap.
The default strategy: Proximal.
2) Gene symbol: Only gene symbol can be supported.
Function introduction:
Users input a genomic position and ATACdb will identify accessible chromatin regions overlapping with the submitted region.
Parameter explanation:
1) Biosample name: Biosample name is made of cell/tissue/cell line name, treatment condition, processing time, etc.
2) Sample ID: Sample ID in ATACdb.
3) Chromosome: Chromosome.
4) Start position: Accessible chromatin region is at the start of the chromosome.
5) End position: Accessible chromatin region is at the end of the chromosome.
Based on the tissue type, users can query accessible chromatin regions associated with a specific type of tissue.
Parameter explanation:
1) Biosample type: Cell type classification of samples.
2) Tissue type: Select the tissue of interest.
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