Sample overview

Sample ID: Sample_1012
Biosample name: HEK293T
Biosample type: Cell Line
Tissue type: Kidney
Cancer type: Normal
Region number: 5
Length: 3.018 kb
GEO/SRA ID: SRR5627155
Mean insert size: 268.940
Standard deviation: 238.335
TSS enrichment score: 1.00000
FRiP: 0.28102
Diasgnostic plot
The percentages of read pairs in FR, RF, and TANDEM orientations.


Accessible chromatin region of HEK293T

Use these accessible chromatin regions to analyze or download

TF footprint of HEK293T


Peak annotation visualization of HEK293T

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Plot B

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Software and parameters used

Read mapping: bowtie2(v2.2.5) -p 10 -X 2000 -x -S
Duplicates Removing: picard MarkDuplicates REMOVE_DUPLICATES=true ASSUME_SORTED=true
Peak calling: macs2(2.1.2) --broad--SPMR --nomodel --extsize 200 -q 0.01
Trimming the adapter: trim_galore --phred33 --stringency 3 --length 20