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Sample overview

Sample ID:	Sample_1313
Biosample name:	GM12878
Biosample type:	Cell Line
Tissue type:	Blood
Cancer type:	Normal
Region number:	30542
Length:	19566.87 kb
GEO/SRA ID:	SRR891270

Chromosome distribution
Quality control

Mean insert size:	272.781
Standard deviation:	240.318
TSS enrichment score:	14.49950
FRiP:	0.14992
Diasgnostic plot
The percentages of read pairs in FR, RF, and TANDEM orientations.

Accessible chromatin region of GM12878

Use these accessible chromatin regions to analyze or download

TF footprint of GM12878

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Peak annotation visualization of GM12878

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Software and parameters used

Read mapping:	bowtie2(v2.2.5) -p 10 -X 2000 -x -S
Duplicates Removing:	picard MarkDuplicates REMOVE_DUPLICATES=true ASSUME_SORTED=true
Peak calling:	macs2(2.1.2) --broad--SPMR --nomodel --extsize 200 -q 0.01
Trimming the adapter:	trim_galore --phred33 --stringency 3 --length 20