Sample overview

Sample ID: Sample_1314
Biosample name: GM12878
Biosample type: Cell Line
Tissue type: Blood
Cancer type: Normal
Region number: 26770
Length: 16576.77 kb
GEO/SRA ID: SRR891271
Mean insert size: 273.357
Standard deviation: 244.224
TSS enrichment score: 11.98390
FRiP: 0.14243
Diasgnostic plot
The percentages of read pairs in FR, RF, and TANDEM orientations.


Accessible chromatin region of GM12878

Use these accessible chromatin regions to analyze or download

TF footprint of GM12878


Peak annotation visualization of GM12878

Plot A

- -

Plot B

- -
Plot A: - -
Note A: - -
Plot B: - -
Note B: - -

Software and parameters used

Read mapping: bowtie2(v2.2.5) -p 10 -X 2000 -x -S
Duplicates Removing: picard MarkDuplicates REMOVE_DUPLICATES=true ASSUME_SORTED=true
Peak calling: macs2(2.1.2) --broad--SPMR --nomodel --extsize 200 -q 0.01
Trimming the adapter: trim_galore --phred33 --stringency 3 --length 20