Sample ID: | Sample_1316 |
Biosample name: | GM12878 |
Biosample type: | Cell Line |
Tissue type: | Blood |
Cancer type: | Normal |
Region number: | 386 |
Length: | 178.519 kb |
GEO/SRA ID: | SRR891274 |
Mean insert size: | 280.474 |
Standard deviation: | 230.844 |
TSS enrichment score: | 2.04448 |
FRiP: | 0.00195 |
Diasgnostic plot | |
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Plot A: | - - | Note A: | - - | Plot B: | - - |
Note B: | - - |
Read mapping: | bowtie2(v2.2.5) -p 10 -X 2000 -x -S |
Duplicates Removing: | picard MarkDuplicates REMOVE_DUPLICATES=true ASSUME_SORTED=true |
Peak calling: | macs2(2.1.2) --broad--SPMR --nomodel --extsize 200 -q 0.01 |
Trimming the adapter: | trim_galore --phred33 --stringency 3 --length 20 |