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Sample overview

Sample ID:	Sample_1317
Biosample name:	CD4+ T cell
Biosample type:	Primary Cell
Tissue type:	Blood
Cancer type:	Normal
Region number:	7785
Length:	3134.858 kb
GEO/SRA ID:	SRR891275

Chromosome distribution
Quality control

Mean insert size:	180.108
Standard deviation:	152.328
TSS enrichment score:	5.27273
FRiP:	0.07125
Diasgnostic plot
The percentages of read pairs in FR, RF, and TANDEM orientations.

Accessible chromatin region of CD4+ T cell

Use these accessible chromatin regions to analyze or download

TF footprint of CD4+ T cell

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Peak annotation visualization of CD4+ T cell

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Software and parameters used

Read mapping:	bowtie2(v2.2.5) -p 10 -X 2000 -x -S
Duplicates Removing:	picard MarkDuplicates REMOVE_DUPLICATES=true ASSUME_SORTED=true
Peak calling:	macs2(2.1.2) --broad--SPMR --nomodel --extsize 200 -q 0.01
Trimming the adapter:	trim_galore --phred33 --stringency 3 --length 20