- Browse accessible chromatin region of the biosample
| Sample ID: |
Sample_1321 |
| Biosample name: |
CD4+ T cell |
| Biosample type: |
Primary Cell |
| Tissue type: |
Blood |
| Cancer type: |
Normal |
| Region number: |
2664 |
| Length: |
1463.527 kb |
| GEO/SRA ID: |
SRR891279 |
| Mean insert size: |
113.635 |
| Standard deviation: |
85.986 |
| TSS enrichment score: |
3.03302 |
| FRiP: |
0.00400 |
|
Diasgnostic plot |
The percentages of read pairs in FR,
RF, and TANDEM orientations.
|
TF footprint of CD4+ T cell
Peak annotation visualization of
CD4+ T cell
| Plot A: |
- - |
Note A: |
- - |
Plot B: |
- - |
| Note B: |
- - |
Software and parameters used
| Read mapping: |
bowtie2(v2.2.5) -p 10 -X 2000 -x -S |
| Duplicates Removing: |
picard MarkDuplicates REMOVE_DUPLICATES=true ASSUME_SORTED=true |
| Peak calling: |
macs2(2.1.2) --broad--SPMR --nomodel --extsize 200 -q 0.01 |
| Trimming the adapter: |
trim_galore --phred33 --stringency 3 --length 20 |
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