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Region definitions are ordinary 3-field bed file format. For example:
chr11 65239110 65264640
chr19 13947194 13962421
chr19 39888494 39901409
chr1 30649567 30655759
chr1 11345200 11359618
Information about UCSC BED format

Species : {{s}}

Tissue Type : {{s}}

SE-Gene Linking Strategies: Closest_Active Overlap Closest Proximal ALL

Fimo: 1.0E-12 1.0E-11 1.0E-10 1.0E-9 1.0E-8 1.0E-7 1.0E-6 none

Pathway Enriciment Threshold

FDR Adjust

Example Submit Reset

Minimum percentage of overlap : % _{(If not, the default value is 50%.)}
Applied on our catalog of peaks
Applied on your submitted regions
Apply the minimum percentage of overlap on both data _{(our catalog of peaks and your submitted regions)}

Function introduction   Guidance
Users can upload a ‘bed’ format file or a region list to identify SEs^③ overlapping the queried regions, genes^④ associated with these SEs, TFs^② binding to these SEs and their upstream pathways^①.
1) Tissue Type: Select one sample tissue type or all.
2) SE-Gene Linking Strategies: select different annotation strategies to link SEs with target genes.
3) Fimo: Set different statistical thresholds to control for false positivity.
4) Pathway Enriciment Threshold: Set a statistical significance threshold of pathway enrichment, which is calculated using hypergeometric test.