About Enhancer

Enhancer ID: E_01_0233
Species: human
Position : chr12:6531857-6533857
Biosample name:
Experiment class : High+Lowthroughput
Enhancer type: Enhancer
Disease: Obesity
Pubmed ID:  31595632
Enhancer experiment: PCR, Western blot
Enhancer experiment description: The RNA concentration was detected by a microplate reader, and RNA was reverse transcribed to cDNA using the QIAGEN miRNA reverse transcription (miScript II RT Kit) and Thermo reverse transcription kits. Using cDNA as a template, the gene expression of U6, miR-326, C/EBP?, PPAR?, and GAPDH was detected by qPCR.

About Target gene

Target gene : --
Strong evidence: qRT-PCR,qPCR,ChIP,3C
Less strong evidence: RNA-Seq
Target gene experiment description: The RNA concentration was detected by a microplate reader, and RNA was reverse transcribed to cDNA using the QIAGEN miRNA reverse transcription (miScript II RT Kit) and Thermo reverse transcription kits. Using cDNA as a template, the gene expression of U6, miR-326, C/EBP?, PPAR?, and GAPDH was detected by qPCR.

About TF

TF name : GAPDH
TF experiment: PCR, Western blot
TF experiment description: The RNA concentration was detected by a microplate reader, and RNA was reverse transcribed to cDNA using the QIAGEN miRNA reverse transcription (miScript II RT Kit) and Thermo reverse transcription kits. Using cDNA as a template, the gene expression of U6, miR-326, C/EBP?, PPAR?, and GAPDH was detected by qPCR.

About Function

Enhancer function : The RNA concentration was detected by a microplate reader, and RNA was reverse transcribed to cDNA using the QIAGEN miRNA reverse transcription (miScript II RT Kit) and Thermo reverse transcription kits. Using cDNA as a template, the gene expression of U6, miR-326, C/EBP?, PPAR?, and GAPDH was detected by qPCR.
Enhancer function experiment: Immunohistochemical staining
Enhancer function
experiment description:
The RNA concentration was detected by a microplate reader, and RNA was reverse transcribed to cDNA using the QIAGEN miRNA reverse transcription (miScript II RT Kit) and Thermo reverse transcription kits. Using cDNA as a template, the gene expression of U6, miR-326, C/EBP?, PPAR?, and GAPDH was detected by qPCR.

About SNP

SNP ID: --

Upstream Pathway Annotation of TF

GeneName Pathway Name Source Gene Number
GAPDH AndrogenReceptor netpath 167
GAPDH Fanconi-bickel syndrome smpdb 14
GAPDH Fructose-1,6-diphosphatase deficiency smpdb 22
GAPDH gluconeogenesis humancyc 24
GAPDH Gluconeogenesis reactome 32
GAPDH Gluconeogenesis smpdb 22
GAPDH Glycogen Storage Disease Type 1A (GSD1A) or Von Gierke Disease smpdb 22
GAPDH Glycogenosis, Type IA. Von gierke disease smpdb 22
GAPDH Glycogenosis, Type IB smpdb 22
GAPDH Glycogenosis, Type IC smpdb 22
GAPDH Glycogenosis, Type VII. Tarui disease smpdb 14
GAPDH glycolysis humancyc 24
GAPDH Glycolysis panther 17
GAPDH Glycolysis reactome 32
GAPDH Glycolysis smpdb 14
GAPDH Huntington disease panther 113
GAPDH Mitochondrial Electron Transport Chain smpdb 8
GAPDH Phosphoenolpyruvate carboxykinase deficiency 1 (PEPCK1) smpdb 22
GAPDH superpathway of conversion of glucose to acetyl CoA and entry into the TCA cycle humancyc 46
GAPDH Triosephosphate isomerase smpdb 22
GAPDH Validated targets of C-MYC transcriptional activation pid 80
GAPDH Warburg Effect smpdb 45
GAPDH Glycolysis / Gluconeogenesis kegg 64
GAPDH Alzheimer's disease kegg 167
GAPDH Hs_Alzheimers_Disease_WP2059_87372 wikipathways 24

Enhancer associated network

The number on yellow line represents the distance between enhancer and target gene

Expression of target genes for the enhancer


Enhancer associated SNPs