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Search Enhancer Database

Explore enhancer annotations by multiple search dimensions

7
Search Methods
5
Species
6,000+
Enhancers
Search By
Tissue-Specific Enhancer Search
Species
Tissue Name
Example
Option Explanation
1) Species: Select from 5 species: human, mouse, rat, zebrafish, drosophila.
2) Tissue Name: Enter a tissue name (e.g., lung, liver, brain) to find enhancers active in that tissue.
Disease-Specific Enhancer Search
Species
Disease Name
Example
Option Explanation
1) Species: Select from 5 species: human, mouse, rat, zebrafish, drosophila.
2) Disease Name: Enter a disease name to find enhancers associated with that disease condition.
Cell Type-Specific Enhancer Search
Species
Cell Type
Example
Option Explanation
1) Species: Select from 5 species: human, mouse, rat, zebrafish, drosophila.
2) Cell Type: Enter a cell type (e.g., B cell, T cell) to find enhancers specific to that cell type.
Cell Line-Specific Enhancer Search
Species
Cell Line Name
Example
Option Explanation
1) Species: Select from 5 species: human, mouse, rat, zebrafish, drosophila.
2) Cell Line: Enter a cell line name (e.g., HEK293T, HeLa) to find enhancers active in that cell line.
Transcription Factor–Associated Enhancer Search
Species
Transcription Factor(s)
Example
Option Explanation
1) Species: Select from 5 species: human, mouse, rat, zebrafish, drosophila.
2) TF Name(s): Enter one or more transcription factors (one per line) to find enhancers associated with those TFs.
Target Gene–Associated Enhancer Search
Species
Gene Symbol(s)
Example
Option Explanation
1) Species: Select from 5 species: human, mouse, rat, zebrafish, drosophila.
2) Gene Symbol(s): Enter one or more gene symbols (one per line) to find enhancers targeting those genes.
Chromosome-Based Enhancer Search
Species
Chromosome
Start Position
End Position
Example
Species
Upload BED File
Drop your BED file or click to browse
Format: chromosome, start, end
Sample File
Option Explanation
Left Panel: Search enhancers by genomic coordinates (chromosome + start/end position).
Right Panel: Upload a BED-format file containing multiple enhancer regions for batch search.