About Enhancer

Enhancer ID: E_01_0660
Species: human
Position : chr11:27652426-27654426
Biosample name:
Experiment class : High+Lowthroughput
Enhancer type: Enhancer
Disease: Major depressive disorder (mdd) and chronic pain
Pubmed ID:  30356873
Enhancer experiment: Quantitative RT-PCR,Open Field Test (OFT),Tail Suspension Test (TST),Forced Swimming Test (FST),Immunohistochemistry,Western Blot,Visceromotor Response (VMR)
Enhancer experiment description: These results together suggest that DSS and CUS can induce the comorbidities of chronic pain and depression-like behavior. The pathology of this comorbidity involves loss of microglia within the mPFC with subsequent activation of NF-?B-p65 and down-regulation of BDNF/p-CREB signaling

About Target gene

Target gene : --
Strong evidence: qRT-PCR,qPCR,ChIP,3C
Less strong evidence: RNA-Seq
Target gene experiment description: These results together suggest that DSS and CUS can induce the comorbidities of chronic pain and depression-like behavior. The pathology of this comorbidity involves loss of microglia within the mPFC with subsequent activation of NF-?B-p65 and down-regulation of BDNF/p-CREB signaling

About TF

TF name : BDNF
TF experiment: Quantitative RT-PCR,Open Field Test (OFT),Tail Suspension Test (TST),Forced Swimming Test (FST),Immunohistochemistry,Western Blot,Visceromotor Response (VMR)
TF experiment description: These results together suggest that DSS and CUS can induce the comorbidities of chronic pain and depression-like behavior. The pathology of this comorbidity involves loss of microglia within the mPFC with subsequent activation of NF-?B-p65 and down-regulation of BDNF/p-CREB signaling

About Function

Enhancer function : These results together suggest that DSS and CUS can induce the comorbidities of chronic pain and depression-like behavior. The pathology of this comorbidity involves loss of microglia within the mPFC with subsequent activation of NF-?B-p65 and down-regulation of BDNF/p-CREB signaling
Enhancer function experiment: Immunohistochemical staining
Enhancer function
experiment description:
These results together suggest that DSS and CUS can induce the comorbidities of chronic pain and depression-like behavior. The pathology of this comorbidity involves loss of microglia within the mPFC with subsequent activation of NF-?B-p65 and down-regulation of BDNF/p-CREB signaling

About SNP

SNP ID: --

Upstream Pathway Annotation of TF

GeneName Pathway Name Source Gene Number
BDNF Heterotrimeric GPCR signaling pathway (through G alpha i and pertussis toxin) ( GPCR signaling (pertussis toxin) ) inoh 228
BDNF Heterotrimeric GPCR signaling pathway (through G alpha q, PLC beta and ERK cascade) ( GPCR signaling (G alpha q) ) inoh 239
BDNF Heterotrimeric GPCR signaling pathway (through G alpha s ACs Epac BRaf and ERKcascade) ( GPCR signaling (G alpha s, Epac and ERK) ) inoh 237
BDNF Heterotrimeric GPCR signaling pathway (through_G alpha s_ACs_PKA_BRaf_and_ERKcascade)(canonical) ( GPCR signaling (G alpha s, PKA and ERK) ) inoh 227
BDNF Heterotrimeric GTP-binding protein coupled receptor signaling pathway (through G alpha i, adenylate cyclase and cAMP) ( GPCR signaling (G alpha i) ) inoh 228
BDNF Heterotrimeric GTP-binding protein coupled receptor signaling pathway (through_G_alpha_s,_cholera_toxin,_adenylate_cyclase_and_cAMP) ( GPCR signaling (cholera toxin) ) inoh 227
BDNF Huntington disease panther 113
BDNF Neurotrophic factor-mediated Trk receptor signaling pid 63
BDNF p75(NTR)-mediated signaling pid 74
BDNF Posttranslational regulation of adherens junction stability and dissassembly pid 50
BDNF SHP2 signaling pid 60
BDNF MAPK signaling pathway kegg 264
BDNF Neurotrophin signaling pathway kegg 126
BDNF Huntington's disease kegg 182
BDNF Hs_BDNF-TrkB_Signaling_WP3676_89741 wikipathways 14
BDNF Hs_MECP2_and_Associated_Rett_Syndrome_WP3584_91190 wikipathways 12
BDNF Hs_Spinal_Cord_Injury_WP2431_87678 wikipathways 21
BDNF Hs_Sudden_Infant_Death_Syndrome_(SIDS)_Susceptibility_Pathways_WP706_86078 wikipathways 33
BDNF Hs_ERK_Pathway_in_Huntington's_Disease_WP3853_89748 wikipathways 10
BDNF Hs_Brain-Derived_Neurotrophic_Factor_(BDNF)_signaling_pathway_WP2380_89803 wikipathways 80

Enhancer associated network

The number on yellow line represents the distance between enhancer and target gene

Expression of target genes for the enhancer


Enhancer associated SNPs