About Enhancer
| Enhancer ID: |
E_01_0794 |
| Species: |
human |
| Position :
|
chr19:41447287-41449287
  |
| Biosample name: |
|
| Experiment class :
|
High+Lowthroughput |
| Enhancer type: |
Enhancer |
| Disease: |
Prostatic cancer |
| Pubmed ID: |
30033362
|
| Enhancer experiment: |
RNA pull-down (chirp) assay, RT qPCR, Western blot, RNA SEQ, eQTL analysis, crispri assay, statistical analysis |
| Enhancer experiment description: |
We showed that rs11672691 maps to the promoter of a short isoform of long noncoding RNA PCAT19 (PCAT19-short), which is in the third intron of the long isoform (PCAT19-long). |
About Target gene
| Target gene : |
PCAT19 |
| Strong evidence: |
qRT-PCR,qPCR,ChIP,3C |
| Less strong evidence: |
RNA-Seq |
| Target gene experiment description: |
We showed that rs11672691 maps to the promoter of a short isoform of long noncoding RNA PCAT19 (PCAT19-short), which is in the third intron of the long isoform (PCAT19-long). |
About TF
| TF name : |
-- |
| TF experiment: |
RNA pull-down (ChIRP) assay,RT-qPCR,Western blot,RNA-seq,eQTL??,CRISPRi assay,???? |
| TF experiment description: |
We showed that rs11672691 maps to the promoter of a short isoform of long noncoding RNA PCAT19 (PCAT19-short), which is in the third intron of the long isoform (PCAT19-long). |
About Function
| Enhancer function : |
We showed that rs11672691 maps to the promoter of a short isoform of long noncoding RNA PCAT19 (PCAT19-short), which is in the third intron of the long isoform (PCAT19-long). |
| Enhancer function experiment: |
Immunohistochemical staining |
Enhancer function
experiment description: |
We showed that rs11672691 maps to the promoter of a short isoform of long noncoding RNA PCAT19 (PCAT19-short), which is in the third intron of the long isoform (PCAT19-long). |
About SNP
Upstream Pathway Annotation of TF
Enhancer associated network
The number on yellow line represents the distance between enhancer and
target gene
Expression of target genes for the
enhancer
Enhancer associated SNPs