About Enhancer
| Enhancer ID: |
E_01_0822 |
| Species: |
human |
| Position :
|
chr19:47400663-47402663
  |
| Biosample name: |
|
| Experiment class :
|
High+Lowthroughput |
| Enhancer type: |
Enhancer |
| Disease: |
Hepatocellular carcinoma |
| Pubmed ID: |
33520978
|
| Enhancer experiment: |
Western blot analysis, RNA extraction and quantitative real-time PCR (QRT PCR) analysis |
| Enhancer experiment description: |
Dual-luciferase reporter gene assay was employed to test the presence of miR-202-3p binding sites in the 3UTR of KDM3A and chromatin immunoprecipitation (ChIP) assay to homeobox A1 (HOXA1) interaction with KDM3A and MEIS3. |
About Target gene
| Target gene : |
MEIS3 |
| Strong evidence: |
qRT-PCR,qPCR,ChIP,3C |
| Less strong evidence: |
RNA-Seq |
| Target gene experiment description: |
Dual-luciferase reporter gene assay was employed to test the presence of miR-202-3p binding sites in the 3UTR of KDM3A and chromatin immunoprecipitation (ChIP) assay to homeobox A1 (HOXA1) interaction with KDM3A and MEIS3. |
About TF
| TF name : |
-- |
| TF experiment: |
????????RNA ??????????? PCR ?qRT-PCR? ?? |
| TF experiment description: |
Dual-luciferase reporter gene assay was employed to test the presence of miR-202-3p binding sites in the 3UTR of KDM3A and chromatin immunoprecipitation (ChIP) assay to homeobox A1 (HOXA1) interaction with KDM3A and MEIS3. |
About Function
| Enhancer function : |
Dual-luciferase reporter gene assay was employed to test the presence of miR-202-3p binding sites in the 3UTR of KDM3A and chromatin immunoprecipitation (ChIP) assay to homeobox A1 (HOXA1) interaction with KDM3A and MEIS3. |
| Enhancer function experiment: |
Immunohistochemical staining |
Enhancer function
experiment description: |
Dual-luciferase reporter gene assay was employed to test the presence of miR-202-3p binding sites in the 3UTR of KDM3A and chromatin immunoprecipitation (ChIP) assay to homeobox A1 (HOXA1) interaction with KDM3A and MEIS3. |
About SNP
Upstream Pathway Annotation of TF
| GeneName |
Pathway Name |
Source |
Gene Number |
Enhancer associated network
The number on yellow line represents the distance between enhancer and
target gene
Expression of target genes for the
enhancer
Enhancer associated SNPs