About Enhancer

Enhancer ID: E_02_0851
Species: mouse
Position : chr10:61403948-61408233
Biosample name:
Experiment class : Low+High throughput
Enhancer type: Enhancer
Disease: --
Pubmed ID:  26494787
Enhancer experiment: ChIP,ChIP-seq
Enhancer experiment description: ChIP (red) and input (blue) wiggle plot overlays showing enrichment of Lhx1 ChIP-seq density at Hesx1,Fzd8,Embigin,Nodal,Otx2,and Foxa3. Purple boxes indicate the positions of previously mapped Nodal Enhancer elements.

About Target gene

Target gene : Nodal(Tg.413d),Nodal(Tg.413d),Nodal(Tg.413d),Nodal(Tg.413d),Nodal(Tg.413d),Nodal(Tg.413d)
Strong evidence: --
Less strong evidence: ChIP,ChIP-seq
Target gene experiment description: Conditional inactivation of Lhx1 dis_x0002_rupts anterior definitive endoderm development and impedes node and midline morphogenesis in part due to severe disturbances in visceral endoderm displacement. Transcriptional profiling and ChIP-seq (chromatin immunopre_x0002_cipitation [ChIP] followed by high-throughput sequencing) experiments identified Lhx1 target genes, including numerous anterior definitive endoderm markers and components of the Wnt signaling pathway. Interestingly, Lhx1-binding sites were enriched at enhancers, including the Nodal-proximal epiblast enhancer element and enhancer regions controlling Otx2 and Foxa2 expression. ;Conditional inactivation of Lhx1 dis_x0002_rupts anterior definitive endoderm development and impedes node and midline morphogenesis in part due to severe disturbances in visceral endoderm displacement. Transcriptional profiling and ChIP-seq (chromatin immunopre_x0002_cipitation [ChIP] followed by high-throughput sequencing) experiments identified Lhx1 target genes, including numerous anterior definitive endoderm markers and components of the Wnt signaling pathway. Interestingly, Lhx1-binding sites were enriched at enhancers, including the Nodal-proximal epiblast enhancer element and enhancer regions controlling Otx2 and Foxa2 expression. ;Conditional inactivation of Lhx1 dis_x0002_rupts anterior definitive endoderm development and impedes node and midline morphogenesis in part due to severe disturbances in visceral endoderm displacement. Transcriptional profiling and ChIP-seq (chromatin immunopre_x0002_cipitation [ChIP] followed by high-throughput sequencing) experiments identified Lhx1 target genes, including numerous anterior definitive endoderm markers and components of the Wnt signaling pathway. Interestingly, Lhx1-binding sites were enriched at enhancers, including the Nodal-proximal epiblast enhancer element and enhancer regions controlling Otx2 and Foxa2 expression. ;Conditional inactivation of Lhx1 dis_x0002_rupts anterior definitive endoderm development and impedes node and midline morphogenesis in part due to severe disturbances in visceral endoderm displacement. Transcriptional profiling and ChIP-seq (chromatin immunopre_x0002_cipitation [ChIP] followed by high-throughput sequencing) experiments identified Lhx1 target genes, including numerous anterior definitive endoderm markers and components of the Wnt signaling pathway. Interestingly, Lhx1-binding sites were enriched at enhancers, including the Nodal-proximal epiblast enhancer element and enhancer regions controlling Otx2 and Foxa2 expression. ;Conditional inactivation of Lhx1 dis_x0002_rupts anterior definitive endoderm development and impedes node and midline morphogenesis in part due to severe disturbances in visceral endoderm displacement. Transcriptional profiling and ChIP-seq (chromatin immunopre_x0002_cipitation [ChIP] followed by high-throughput sequencing) experiments identified Lhx1 target genes, including numerous anterior definitive endoderm markers and components of the Wnt signaling pathway. Interestingly, Lhx1-binding sites were enriched at enhancers, including the Nodal-proximal epiblast enhancer element and enhancer regions controlling Otx2 and Foxa2 expression. ;Conditional inactivation of Lhx1 dis_x0002_rupts anterior definitive endoderm development and impedes node and midline morphogenesis in part due to severe disturbances in visceral endoderm displacement. Transcriptional profiling and ChIP-seq (chromatin immunopre_x0002_cipitation [ChIP] followed by high-throughput sequencing) experiments identified Lhx1 target genes, including numerous anterior definitive endoderm markers and components of the Wnt signaling pathway. Interestingly, Lhx1-binding sites were enriched at enhancers, including the Nodal-proximal epiblast enhancer element and enhancer regions controlling Otx2 and Foxa2 expression.

About TF

TF name : Lhx1(Lim1)Eomes(C77258,TBR-2,Tbr2)Lhx1(Lim1)Eomes(C77258,TBR-2,Tbr2)Lhx1(Lim1)Eomes(C77258,TBR-2,Tbr2)Lhx1(Lim1)Eomes(C77258,TBR-2,Tbr2)Lhx1(Lim1)Eomes(C77258,TBR-2,Tbr2)Lhx1(Lim1)Eomes(C77258,TBR-2,Tbr2)
TF experiment: ChIP
TF experiment description: Several putative Lhx1 target genes were represented in our ChIP data set. For example, Lhx1 binding was detected at two distinct regions at the Hesx1 locus, including a regulatory element in the 5? untranslated region (containing two Lhx1-binding motifs) and a 3? distal enhancer. Lhx1 ChIP peaks were also present upstream of Embigin exon 1.;Several putative Lhx1 target genes were represented in our ChIP data set. For example, Lhx1 binding was detected at two distinct regions at the Hesx1 locus, including a regulatory element in the 5? untranslated region (containing two Lhx1-binding motifs) and a 3? distal enhancer. Lhx1 ChIP peaks were also present upstream of Embigin exon 1.;Several putative Lhx1 target genes were represented in our ChIP data set. For example, Lhx1 binding was detected at two distinct regions at the Hesx1 locus, including a regulatory element in the 5? untranslated region (containing two Lhx1-binding motifs) and a 3? distal enhancer. Lhx1 ChIP peaks were also present upstream of Embigin exon 1.;Several putative Lhx1 target genes were represented in our ChIP data set. For example, Lhx1 binding was detected at two distinct regions at the Hesx1 locus, including a regulatory element in the 5? untranslated region (containing two Lhx1-binding motifs) and a 3? distal enhancer. Lhx1 ChIP peaks were also present upstream of Embigin exon 1.;Several putative Lhx1 target genes were represented in our ChIP data set. For example, Lhx1 binding was detected at two distinct regions at the Hesx1 locus, including a regulatory element in the 5? untranslated region (containing two Lhx1-binding motifs) and a 3? distal enhancer. Lhx1 ChIP peaks were also present upstream of Embigin exon 1.;Several putative Lhx1 target genes were represented in our ChIP data set. For example, Lhx1 binding was detected at two distinct regions at the Hesx1 locus, including a regulatory element in the 5? untranslated region (containing two Lhx1-binding motifs) and a 3? distal enhancer. Lhx1 ChIP peaks were also present upstream of Embigin exon 1.

About Function

Enhancer function : --
Enhancer function experiment: --
Enhancer function
experiment description:
--

About SNP

SNP ID: --

Upstream Pathway Annotation of TF

GeneName Pathway Name Source Gene Number
Lhx1 Hs_Endoderm_Differentiation_WP2853_88152 wikipathways 62
Lhx1 Hs_Ectoderm_Differentiation_WP2858_89329 wikipathways 56
Eomes Downstream signaling in nave CD8+ T cells pid 69
Eomes IL12-mediated signaling events pid 62
Eomes POU5F1 (OCT4), SOX2, NANOG repress genes related to differentiation reactome 10
Lhx1 Hs_Endoderm_Differentiation_WP2853_88152 wikipathways 62
Lhx1 Hs_Ectoderm_Differentiation_WP2858_89329 wikipathways 56
Eomes Downstream signaling in nave CD8+ T cells pid 69
Eomes IL12-mediated signaling events pid 62
Eomes POU5F1 (OCT4), SOX2, NANOG repress genes related to differentiation reactome 10
Lhx1 Hs_Endoderm_Differentiation_WP2853_88152 wikipathways 62
Lhx1 Hs_Ectoderm_Differentiation_WP2858_89329 wikipathways 56
Eomes Downstream signaling in nave CD8+ T cells pid 69
Eomes IL12-mediated signaling events pid 62
Eomes POU5F1 (OCT4), SOX2, NANOG repress genes related to differentiation reactome 10
Lhx1 Hs_Endoderm_Differentiation_WP2853_88152 wikipathways 62
Lhx1 Hs_Ectoderm_Differentiation_WP2858_89329 wikipathways 56
Eomes Downstream signaling in nave CD8+ T cells pid 69
Eomes IL12-mediated signaling events pid 62
Eomes POU5F1 (OCT4), SOX2, NANOG repress genes related to differentiation reactome 10
Lhx1 Hs_Endoderm_Differentiation_WP2853_88152 wikipathways 62
Lhx1 Hs_Ectoderm_Differentiation_WP2858_89329 wikipathways 56
Eomes Downstream signaling in nave CD8+ T cells pid 69
Eomes IL12-mediated signaling events pid 62
Eomes POU5F1 (OCT4), SOX2, NANOG repress genes related to differentiation reactome 10
Lhx1 Hs_Endoderm_Differentiation_WP2853_88152 wikipathways 62
Lhx1 Hs_Ectoderm_Differentiation_WP2858_89329 wikipathways 56
Eomes Downstream signaling in nave CD8+ T cells pid 69
Eomes IL12-mediated signaling events pid 62
Eomes POU5F1 (OCT4), SOX2, NANOG repress genes related to differentiation reactome 10

Enhancer associated network

The number on yellow line represents the distance between enhancer and target gene

Expression of target genes for the enhancer


Enhancer associated SNPs