Enhancer Detail

Comprehensive information about experimentally validated enhancers

About Enhancer
Enhancer ID: E_01449
Species: Homo sapiens
Position : chr6:32570000-32573500
Year: 2020
Title: A super enhancer controls expression and chromatin architecture within the MHC class II locus
Genome Build: hg38
Enhancer Type: Enhancer
Condition: Disease
Disease Name: --
PMID:  31753848
MONDO:
Tissue: Lymphoid tissue
Tissue Ontology ID: UBERON:0001745
Cell Source: Not available
CVCL ID:
Cell Type:
Cell Ontology ID:
Experiment Type: Functional perturbation assay, Chromatin interaction assay, Enhancer activity assay
High Throughput Method: ChIP-seq, RNA-seq
Low Throughput Method: CRISPR Knockout, ChIP-RT-qPCR, RT-RT-qPCR, 3C, Flow Cytometry
About Target Gene
Target gene : HLA-DRB1
About TF
TF name : CIITA; CTCF
About Regulatory State
Regulatory State : Active
Upstream Pathway Annotation of TF
GeneName Pathway Name Source Gene Number
Enhancer Associated Network
Overlapping Enhancers (hg38) 2 found
Enhancer ID Position Tissue Cell Disease
E_01405 chr6:32553535-32609681 Blood Burkitt lymphoma cell Burkitt lymphoma
E_01437 chr6:32570000-32573500 Lymphoid tissue -- --
Expression of Target Genes for the Enhancer