About Enhancer
| Enhancer ID: | E_01893 |
| Species: | Homo sapiens |
| Position : | chr8:54268115-54268740   |
| Year: | 2023 |
| Title: | Dynamic network-guided CRISPRi screen identifies CTCF-loop-constrained nonlinear enhancer gene regulatory activity during cell state transitions |
| Genome Build: | hg38 |
| Enhancer Type: | Enhancer |
| Condition: | Disease |
| Disease Name: | medulloblastoma |
| PMID: | 37488417 |
| MONDO: | MONDO:0005146 |
| Tissue: | Cerebellum |
| Tissue Ontology ID: | UBERON:0002037 |
| Cell Source: | D283 cells |
| CVCL ID: | CVCL_1155 |
| Cell Type: | medulloblastoma cell |
| Cell Ontology ID: | CL:0000127 |
| Experiment Type: | CRISPR interference-based functional screen |
| High Throughput Method: | CRISPRi screen, RNA-seq, ATAC-seq, ChIP-seq, Hi-C |
| Low Throughput Method: | RT-qPCR, flow cytometry, FACS |
About Target Gene
| Target gene : | SOX17 |
About TF
| TF name : | EOMESGATA6SOX17MIXL1 |
About Regulatory State
| Regulatory State : | Active |
Upstream Pathway Annotation of TF
| GeneName | Pathway Name | Source | Gene Number |
|---|---|---|---|
| EOMES | Downstream signaling in naïve CD8+ T cells | pid | 69 |
| EOMES | IL12-mediated signaling events | pid | 62 |
| EOMES | POU5F1 (OCT4), SOX2, NANOG repress genes related to differentiation | reactome | 10 |
| GATA6 | Factors involved in megakaryocyte development and platelet production | reactome | 111 |
| GATA6 | Notch-mediated HES/HEY network | pid | 48 |
| GATA6 | POU5F1 (OCT4), SOX2, NANOG repress genes related to differentiation | reactome | 10 |
| GATA6 | Surfactant metabolism | reactome | 30 |
| GATA6 | Hs_Endoderm_Differentiation_WP2853_88152 | wikipathways | 62 |
| SOX17 | Deactivation of the beta-catenin transactivating complex | reactome | 42 |
| SOX17 | Wnt signaling pathway | kegg | 135 |
| SOX17 | Hs_Endoderm_Differentiation_WP2853_88152 | wikipathways | 62 |
| MIXL1 | Hs_Endoderm_Differentiation_WP2853_88152 | wikipathways | 62 |
Enhancer Associated Network
Overlapping Enhancers (hg38)
1 found
| Enhancer ID | Position | Tissue | Cell | Disease |
|---|---|---|---|---|
| E_00100 | chr8:54268120-54269407 | Definitive endoderm | human embryonic stem cell | -- |
Expression of Target Genes for the Enhancer