About Enhancer
| Enhancer ID: | E_02888 |
| Species: | Mus musculus |
| Position : | chr15:72250000-72250650   |
| Year: | 2023 |
| Title: | Allelic chromatin structure precedes imprinted expression of Kcnk9 during neurogenesis |
| Genome Build: | mm10 |
| Enhancer Type: | Enhancer |
| Condition: | Normal |
| Disease Name: | -- |
| PMID: | 37821107 |
| MONDO: | |
| Tissue: | Brain |
| Tissue Ontology ID: | UBERON:0000955 |
| Cell Source: | Embryonic Stem Cells (ESCs) |
| CVCL ID: | |
| Cell Type: | embryonic stem cell |
| Cell Ontology ID: | CL:0002322 |
| Experiment Type: | Enhancer activity assay, Chromatin interaction assay, Functional perturbation assay |
| High Throughput Method: | Hi-C, ChIP-seq, RNA-seq |
| Low Throughput Method: | CRISPR Knockout, ChIP-qPCR, RT-qPCR, Western blot, Region Capture Hi-C |
About Target Gene
| Target gene : | Kcnk9 |
About TF
| TF name : | Ctcf |
About Regulatory State
| Regulatory State : | Silenced |
Upstream Pathway Annotation of TF
| GeneName | Pathway Name | Source | Gene Number |
|---|---|---|---|
| Ctcf | Activation of anterior HOX genes in hindbrain development during early embryogenesis | reactome | 120 |
| Ctcf | TGF_beta_Receptor | netpath | 220 |
Enhancer Associated Network
Overlapping Enhancers (mm10)
No overlapping enhancers found in mm10 at this locus.
Expression of Target Genes for the Enhancer