Enhancer Detail

Comprehensive information about experimentally validated enhancers

About Enhancer
Enhancer ID: E_04030
Species: Mus musculus
Position : chr4:147122070-148025142
Year: 2019
Title: PCGF6 regulates stem cell pluripotency as a transcription activator via super-enhancer dependent chromatin interactions.
Genome Build: mm10
Enhancer Type: Super-enhancer
Condition: Normal
PMID:  31041782
Tissue: embryo
Tissue Ontology ID: UBERON:0000922
Cell Source: Mouse embryonic stem cells (mESCs)
Cell Type: mouse embryonic stem cell
Cell Ontology ID: CL:0002322
Experiment Type: Enhancer activity assay, TF binding assay, Chromatin interaction assay, Functional perturbation assay
High Throughput Method: ChIP-seq; RNA-seq; Hi-C; Capture Hi-C
Low Throughput Method: ChIP-RT-qPCR; RT-RT-qPCR; Western blot
About Target Gene
Target gene : Agtrap
About TF
TF name : NA
About Regulatory State
Regulatory State : Active
Upstream Pathway Annotation of TF
GeneName Pathway Name Source Gene Number
Enhancer Associated Network
Overlapping Enhancers (mm10) 2 found
Enhancer ID Position Tissue Cell Disease
E_02632 chr4:147962887-147964479 heart NA NA
E_02633 chr4:147962887-147964479 heart NA NA
Expression of Target Genes for the Enhancer