Enhancer Detail

Comprehensive information about experimentally validated enhancers

About Enhancer
Enhancer ID: E_04708
Species: Mus musculus
Position : chr5:29641240-29642424
Year: 2016
Title: The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances.
Genome Build: mm10
Enhancer Type: Enhancer
Condition: Normal
PMID:  27867070
Tissue: limb bud
Tissue Ontology ID: UBERON:0004347
Cell Source: E11.5 mouse limb bud
Cell Type: limb bud mesenchymal cell
Experiment Type: Long-range enhancer-promoter interaction; structural perturbation
High Throughput Method: 4C-seq; Hi-C integration
Low Throughput Method: Engineered chromosomal rearrangements; reporter sensor assay; Shh expression analysis
About Target Gene
Target gene : Shh
About TF
TF name : NA
About Regulatory State
Regulatory State : Active
Upstream Pathway Annotation of TF
GeneName Pathway Name Source Gene Number
Enhancer Associated Network
Overlapping Enhancers (mm10) 3 found
Enhancer ID Position Tissue Cell Disease
E_04709 chr5:29641240-29642424 limb bud limb bud mesenchymal cell NA
E_04710 chr5:29641240-29642424 limb bud limb bud mesenchymal cell NA
E_04711 chr5:29641240-29642424 limb bud limb bud mesenchymal cell NA
Expression of Target Genes for the Enhancer