Gene Overview
Target Gene: NPHP1
NCBI Official Symbol: NPHP1
Entrez ID: 4867
Ensembl ID: ENSG00000144061
Gene Full Name: nephrocystin 1
Strand: -
Gene Locus: 2q13
External Links:

NPHP1 Significantly Regulated by These T(co)Fs

T(co)Fs that Activate NPHP1   
T(co)Fs that Repress NPHP1
The Intensity of the Gene Regulated by T(co)Fs:
NPHP1-T(co)F Pairs
Target
Gene
T(co)F Knock
-Method
Tissue Type Biosample
Name
Fold
Change
Log2FC P-value Corrected
_P
Dataset ID
NPHP1 HOXA1 siRNA Lung_fibroblast IMR-90 1.60782 0.68511 0.03016 0.18518 DataSet_01_110
NPHP1 TCF3 shRNA Mammary_gland MDA-MB468 0.645 -0.63264 5.03155e-06 3e-04 DataSet_01_116
NPHP1 ZIC2 siRNA Pancreas PANC1 3.65946 1.87163 - - DataSet_01_121
NPHP1 POLR3A siRNA Mammary_gland MCF7 0.64529 -0.63199 - - DataSet_01_139
NPHP1 ELK1 siRNA Peripheral_blood CD4+ T cells 2.80276 1.48685 0.01337 0.06268 DataSet_01_162
NPHP1 JUN siRNA Peripheral_blood CD4+ T cells 1.59236 0.67117 0.14105 0.35596 DataSet_01_164
NPHP1 NFATC3 siRNA Peripheral_blood CD4+ T cells 2.35452 1.23543 0.02682 0.16459 DataSet_01_166
NPHP1 STAT3 siRNA Peripheral_blood CD4+ T cells 0.47342 -1.0788 0.28116 0.99183 DataSet_01_168
NPHP1 GABPA shRNA Prostate C4-2B 1758.24 10.7799 0.23755 0.43934 DataSet_01_190
NPHP1 GABPA shRNA Prostate LNCaP 1256.88 10.2956 0.46315 0.7048 DataSet_01_191
NPHP1 GATA2 siRNA Prostate LNCaP 1.59073 0.66969 0.01473 0.04663 DataSet_01_193
NPHP1 CREB1 shRNA Parotid_gland H3118 MEC 0.65958 -0.60038 0.18181 0.54295 DataSet_01_194
NPHP1 TP63 siRNA Immortalized_keratinocyte HaCaT RG 0.50929 -0.97345 - - DataSet_01_196
NPHP1 TP63 siRNA Head_and_neck SCC-1 0.51252 -0.96433 - - DataSet_01_199
NPHP1 XBP1 shRNA Mammary_gland T47D 0.4903 -1.02827 8.32296e-06 0.00035 DataSet_01_203
NPHP1 FOXP1 siRNA Haematopoietic_and_lymphoid_tissue OCI-Ly7 1.51262 0.59705 - - DataSet_01_210
NPHP1 SNAI2 shRNA Skin Primary human keratinocytes 0.55946 -0.83789 0.00123 0.01601 DataSet_01_225
NPHP1 KLF2 shRNA Bone_marrow RPMI8226 1.95549 0.96753 0.10331 0.71091 DataSet_01_226
NPHP1 FOXO3 siRNA Pancreas PANC1 0.34098 -1.55223 - - DataSet_01_267
NPHP1 STAT5 shRNA Prostate CWR22Pc 0.52529 -0.92882 0.00714 0.04342 DataSet_01_279
NPHP1 ZIC5 siRNA Skin A375 0.66576 -0.58694 - - DataSet_01_284
NPHP1 SP3 siRNA Haematopoietic_and_lymphoid_tissue JURKAT 2.51727 1.33186 0.01928 0.77909 DataSet_01_290
NPHP1 POSTN shRNA Brain GSC272 0.53179 -0.91107 0.23776 0.61625 DataSet_01_293
NPHP1 TFAP4 siRNA Brain BE(2)-C 0.3513 -1.50922 0.44801 0.51638 DataSet_01_295
NPHP1 ELK3 shRNA Mammary_gland MDA-MB-231 2.24043 1.16378 0.00024 0.00113 DataSet_01_318
NPHP1 MYC siRNA Colon HCT116 0.60624 -0.72203 5.18623e-06 3.40542e-05 DataSet_01_324
NPHP1 GATA3 siRNA Oral_cavity OEC-M1 1.97037 0.97847 0.14362 0.99787 DataSet_01_347
NPHP1 PAX3 shRNA Soft_tissue Rh30 1.70438 0.76925 - - DataSet_01_359
NPHP1 SOX17 siRNA Umbilical_vein HUVEC 0.49469 -1.0154 - - DataSet_01_360
NPHP1 FIP1L1 shRNA Liver HepG2 2.42471 1.27781 0.00677 0.03377 DataSet_02_103
NPHP1 U2AF2 shRNA Liver HepG2 0.52126 -0.93993 0.00456 0.05599 DataSet_02_105
NPHP1 TAF15 shRNA Liver HepG2 1.57018 0.65093 0.08317 0.13213 DataSet_02_106
NPHP1 SSB shRNA Liver HepG2 0.43257 -1.20898 0.00014 0.00391 DataSet_02_107
NPHP1 ZNF622 shRNA Liver HepG2 0.54483 -0.87613 0.21311 0.2844 DataSet_02_108
NPHP1 BCLAF1 shRNA Liver HepG2 0.61391 -0.70389 0.0115 0.05252 DataSet_02_112
NPHP1 U2AF2 shRNA Liver HepG2 0.20935 -2.25601 0.06843 0.17166 DataSet_02_113
NPHP1 PCBP1 shRNA Liver HepG2 1.52924 0.61281 0.04825 0.09061 DataSet_02_115
NPHP1 TARDBP shRNA Liver HepG2 0.26949 -1.89171 0.00134 0.01764 DataSet_02_116
NPHP1 HNRNPLL shRNA Liver HepG2 0.17372 -2.52517 0.00038 0.01127 DataSet_02_125
NPHP1 TARDBP shRNA Haematopoietic_and_lymphoid_tissue K562 0.6 -0.73697 0.12144 0.40183 DataSet_02_129
NPHP1 AGO2 shRNA Haematopoietic_and_lymphoid_tissue K562 1.76471 0.81943 0.63658 0.75824 DataSet_02_132
NPHP1 SRSF9 shRNA Haematopoietic_and_lymphoid_tissue K562 0.3 -1.73697 0.04149 0.14442 DataSet_02_134
NPHP1 RBM34 shRNA Haematopoietic_and_lymphoid_tissue K562 4.8 2.26303 0.36369 0.57732 DataSet_02_141
NPHP1 PTBP1 shRNA Haematopoietic_and_lymphoid_tissue K562 0.29412 -1.76553 0.04457 0.23818 DataSet_02_144
NPHP1 CCAR2 shRNA Haematopoietic_and_lymphoid_tissue K562 2 1 0.79378 0.94239 DataSet_02_146
NPHP1 FIP1L1 shRNA Haematopoietic_and_lymphoid_tissue K562 0.2 -2.32193 0.47318 0.61456 DataSet_02_147
NPHP1 ILF3 shRNA Haematopoietic_and_lymphoid_tissue K562 0.26667 -1.90689 0.05225 0.31777 DataSet_02_148
NPHP1 NONO shRNA Haematopoietic_and_lymphoid_tissue K562 0.04762 -4.39232 0.0117 0.19424 DataSet_02_149
NPHP1 YBX3 shRNA Haematopoietic_and_lymphoid_tissue K562 0.26667 -1.90689 0.03066 0.44818 DataSet_02_153
NPHP1 SRSF4 shRNA Haematopoietic_and_lymphoid_tissue K562 2 1 1 1 DataSet_02_154
NPHP1 GTF2F1 shRNA Haematopoietic_and_lymphoid_tissue K562 3.66667 1.87447 0.96945 1 DataSet_02_157
NPHP1 XRCC5 shRNA Haematopoietic_and_lymphoid_tissue K562 0.33333 -1.58496 0.04588 0.62786 DataSet_02_159
NPHP1 SUB1 shRNA Haematopoietic_and_lymphoid_tissue K562 10.3333 3.36923 0.05276 0.70349 DataSet_02_161
NPHP1 AGO1 shRNA Haematopoietic_and_lymphoid_tissue K562 3.5 1.80735 0.02538 0.53443 DataSet_02_162
NPHP1 U2AF1 shRNA Haematopoietic_and_lymphoid_tissue K562 1.7 0.76553 0.66934 0.78962 DataSet_02_165
NPHP1 RBM22 shRNA Haematopoietic_and_lymphoid_tissue K562 3 1.58496 0.05462 0.14508 DataSet_02_168
NPHP1 TARDBP shRNA Haematopoietic_and_lymphoid_tissue K562 37 5.20945 0.00242 0.04354 DataSet_02_169
NPHP1 U2AF2 shRNA Haematopoietic_and_lymphoid_tissue K562 2.8 1.48543 0.20514 0.33354 DataSet_02_170
NPHP1 LMNA siRNA Haematopoietic_and_lymphoid_tissue K562 5 2.32193 0.082 1 DataSet_02_175
NPHP1 CEBPZ siRNA Haematopoietic_and_lymphoid_tissue K562 15 3.90689 0.61752 1 DataSet_02_176
NPHP1 ZNF180 siRNA Haematopoietic_and_lymphoid_tissue K562 2.5 1.32193 0.12911 1 DataSet_02_177
NPHP1 ZMIZ1 siRNA Haematopoietic_and_lymphoid_tissue K562 0.16667 -2.58496 0.15067 1 DataSet_02_181
NPHP1 STAT5A siRNA Haematopoietic_and_lymphoid_tissue K562 2 1 0.27044 1 DataSet_02_182
NPHP1 CTCF siRNA Haematopoietic_and_lymphoid_tissue K562 0.55556 -0.848 0.43584 1 DataSet_02_185
NPHP1 BHLHE40 siRNA Haematopoietic_and_lymphoid_tissue K562 0.47619 -1.07039 0.05869 1 DataSet_02_186
NPHP1 BACH1 siRNA Haematopoietic_and_lymphoid_tissue K562 6 2.58496 0.04887 1 DataSet_02_188
NPHP1 MAFG siRNA Haematopoietic_and_lymphoid_tissue K562 13 3.70044 0.21569 1 DataSet_02_189
NPHP1 LMNB2 siRNA Haematopoietic_and_lymphoid_tissue K562 0.5 -1 0.26485 1 DataSet_02_191
NPHP1 MAX siRNA Haematopoietic_and_lymphoid_tissue K562 3.5 1.80735 0.45499 1 DataSet_02_192
NPHP1 ARID3A siRNA Haematopoietic_and_lymphoid_tissue K562 0.28571 -1.80735 0.07998 1 DataSet_02_193
NPHP1 TCP1 siRNA Haematopoietic_and_lymphoid_tissue K562 15.5 3.9542 0.389 1 DataSet_02_194
NPHP1 CHD2 siRNA Haematopoietic_and_lymphoid_tissue K562 5.5 2.45943 0.00122 0.12618 DataSet_02_196
NPHP1 CDAN1 siRNA Haematopoietic_and_lymphoid_tissue K562 6 2.58496 0.04068 1 DataSet_02_197
NPHP1 UBTF siRNA Haematopoietic_and_lymphoid_tissue K562 0.33333 -1.58496 0.58031 1 DataSet_02_198
NPHP1 TAL1 siRNA Haematopoietic_and_lymphoid_tissue K562 0.26667 -1.90689 0.09635 1 DataSet_02_201
NPHP1 BRCA1 siRNA Haematopoietic_and_lymphoid_tissue K562 12 3.58496 0.09013 1 DataSet_02_202
NPHP1 RCOR1 siRNA Haematopoietic_and_lymphoid_tissue K562 0.17391 -2.52356 0.73314 1 DataSet_02_204
NPHP1 E2F6 siRNA Haematopoietic_and_lymphoid_tissue K562 0.5 -1 0.17717 1 DataSet_02_205
NPHP1 AR siRNA Prostate LNCaP 0.661434 -0.596331 0.355269034670521 1 DataSet_03_005
NPHP1 FOXO1 siRNA Skin primary human dermal lymphatic endothelial cells 4.638 2.2135 - - DataSet_03_096
NPHP1 GATA6 siRNA Stomach YCC3 1.51017 0.594708 0.144599568531183 0.761059349898558 DataSet_03_110
NPHP1 HIF3A siRNA Liver Hep3B 0.617709 -0.695 0.309422543750194 1 DataSet_03_120
NPHP1 HIF3A siRNA Liver Hep3B 0.617709 -0.695 0.309422543750194 1 DataSet_03_121
NPHP1 KLF5 siRNA Stomach KatoIII 0.506461 -0.981476 0.149606294036041 0.596277104029289 DataSet_03_150
NPHP1 MYB siRNA Cord_Blood CD34+ progenitor cells 0.244765 -2.03053 - - DataSet_03_170
NPHP1 PHB shRNA Embryo Embryonic stem cells (ESCs) 0.581618 -0.781855 0.0146547117520453 0.0427193308646462 DataSet_03_211
NPHP1 SOX11 siRNA Lung_fibroblast NHLF 1.76035 0.815862 0.117281322993881 0.514592478043163 DataSet_03_237
NPHP1 SOX11 siRNA Lung_fibroblast NHLF 2.30838 1.20688 0.0302634406806234 0.269693815603863 DataSet_03_238
NPHP1 SP1 siRNA Ovary OVSAYO 0.646635 -0.628977 0.101128981400151 0.385635122128086 DataSet_03_251
NPHP1 STAT3 CRISPR Embryo hESC 2.50199 1.32307 0.0251492934895262 0.0911981547876567 DataSet_03_258
NPHP1 NKRF shRNA Haematopoietic_and_lymphoid_tissue K562 136.962 7.09763 0.054105676761795 0.1440935917853 DataSet_04_014
NPHP1 SMAD2 CRISPR Haematopoietic_and_lymphoid_tissue K562 0.588235 -0.765535 0.909737747119775 0.942341308922786 DataSet_04_018
NPHP1 ANXA2 CRISPR Liver HepG2 2.5 1.32193 0.000294714762040831 0.252504623891802 DataSet_04_024
NPHP1 NFX1 CRISPR Liver HepG2 0.42547 -1.23287 0.0245487267085825 0.0628896406295812 DataSet_04_032
NPHP1 ZC3H8 shRNA Liver HepG2 0.516643 -0.952762 0.00718203018946455 0.0940129719426895 DataSet_04_040
NPHP1 ACTN4 CRISPR Liver HepG2 2.02581 1.0185 0.0153295897484306 0.0694756930331399 DataSet_04_042
NPHP1 CHCHD3 CRISPR Liver HepG2 0.598901 -0.73961 0.0442399680366991 0.462359872902174 DataSet_04_067
NPHP1 RIOK2 CRISPR Liver HepG2 1.61146 0.688373 0.055353345028231 0.944114636228534 DataSet_04_070
NPHP1 CALR shRNA Liver HepG2 0.559406 -0.838033 0.00630338794132837 0.0276487270377238 DataSet_04_053
NPHP1 CCAR1 shRNA Liver HepG2 1.50912 0.593711 0.00312139020039622 0.0263914173191917 DataSet_04_054
NPHP1 CNOT7 shRNA Liver HepG2 3.54406 1.8254 0.000170292609546435 0.00320836806862655 DataSet_04_051
NPHP1 UBE2L3 shRNA Liver HepG2 0.39359 -1.34524 0.00187296556171697 0.0154902289960225 DataSet_04_055
NPHP1 YBX3 shRNA Liver HepG2 0.564019 -0.826183 0.0561096204006691 0.177972974188201 DataSet_02_98
NPHP1 ACTN4 CRISPR Haematopoietic_and_lymphoid_tissue K562 0.181818 -2.45943 0.366058918168957 0.577108141897441 DataSet_04_048
NPHP1 DDX17 CRISPR Haematopoietic_and_lymphoid_tissue K562 3 1.58496 0.68508665269571 0.947200401449688 DataSet_04_047
NPHP1 CITED2 CRISPRi Haematopoietic_and_lymphoid_tissue K562 5 2.32193 0.212173211807761 0.475150352476328 DataSet_02_38
NPHP1 DPF2 CRISPRi Haematopoietic_and_lymphoid_tissue K562 0.230769 -2.11548 0.382379122377555 0.546267563319235 DataSet_02_14
NPHP1 ERF CRISPRi Haematopoietic_and_lymphoid_tissue K562 0.0769231 -3.70044 0.381276216680169 0.560167028222086 DataSet_02_34
NPHP1 HMGN3 CRISPRi Haematopoietic_and_lymphoid_tissue K562 4.53846 2.1822 0.271608890758819 0.728576391750762 DataSet_02_45
NPHP1 LDB1 CRISPRi Haematopoietic_and_lymphoid_tissue K562 2.38462 1.25376 0.338891989749796 0.520630776025398 DataSet_02_35
NPHP1 NFE2L1 CRISPRi Haematopoietic_and_lymphoid_tissue K562 4.15385 2.05445 0.164211821038729 0.463981609884261 DataSet_02_32
NPHP1 TBL1XR1 CRISPRi Haematopoietic_and_lymphoid_tissue K562 4.30769 2.10692 0.0878478412433201 0.205635880136174 DataSet_02_43
NPHP1 TEAD2 CRISPRi Haematopoietic_and_lymphoid_tissue K562 0.230769 -2.11548 0.394910880804969 0.555190301408604 DataSet_02_33
NPHP1 TLE2 CRISPRi Haematopoietic_and_lymphoid_tissue K562 2.69231 1.42884 0.0936184584369755 0.211854662095546 DataSet_02_53
NPHP1 ABT1 shRNA Haematopoietic_and_lymphoid_tissue K562 0.357143 -1.48543 0.573043432172289 0.718073913770655 DataSet_04_060
NPHP1 CNOT7 shRNA Haematopoietic_and_lymphoid_tissue K562 5 2.32193 0.478619180655053 0.672613408012759 DataSet_04_061
NPHP1 DDX1 shRNA Haematopoietic_and_lymphoid_tissue K562 1.66667 0.736966 0.637111853942719 0.90284635326174 DataSet_04_063
NPHP1 PRPF6 shRNA Haematopoietic_and_lymphoid_tissue K562 3.33333 1.73697 0.656180449027297 0.895795649908308 DataSet_04_065
NPHP1 UBE2L3 shRNA Haematopoietic_and_lymphoid_tissue K562 2.66667 1.41504 0.610558884068826 0.816981947114318 DataSet_04_062
NPHP1 SMARCA4 siRNA Colon HCT116 0.641498 -0.640484 1.234648e-02 0.1422748 DataSet_03_302
NPHP1 SNAI2 shRNA Pancreas pancreatic cancer stem cells 0.648143 -0.625617 2.122010e-01 0.6510154 DataSet_03_306
NPHP1 TET1 CRISPR Mammary_gland MDA-MB-231 0.541667 -0.884522 1.220968e-03 1.492906e-02 DataSet_03_347
NPHP1 SKI CRISPR Blood HL60 0.539267 -0.890928 1.278964e-02 0.211155768 DataSet_03_351
NPHP1 ESR1 siRNA Mammary_gland MCF7 1.65949 0.730741 8.736282e-04 0.0178123755 DataSet_03_352
NPHP1 ETV5 knockdown Colon HT29 0.614872 -0.701641 1.542903e-02 0.143811360 DataSet_03_353
NPHP1 TET1 CRISPR Mammary_gland Hs578T 0.638964 -0.646195 6.031569e-02 1.656295e-01 DataSet_03_355
NPHP1 PTPN14 CRISPR Brain U5-NPC 0.5839 -0.776206 4.579341e-02 0.26997021 DataSet_03_357
NPHP1 TP53 CRISPR Brain U5-NPC 1.75775 0.813731 8.831366e-02 2.253640e-01 DataSet_03_358
NPHP1 RUNX1 shRNA Haematopoietic_and_lymphoid_tissue OCI-AML5 0.528551 -0.919885 7.830918e-02 2.845989e-01 DataSet_03_359
NPHP1 EP300 shRNA Mammary_gland MCF10AT 2.09524 1.06711 6.944514e-03 0.059759149 DataSet_03_364
NPHP1 DNMT3A knockout Embryo_kidney HEK293T 3.68904 1.88325 - - DataSet_03_369
NPHP1 ZFP36L1 siRNA Urinary_bladder J82 2.41667 1.27302 - - DataSet_03_371
NPHP1 KAT6A CRISPR Haematopoietic_and_lymphoid_tissue MOLM-13 5.42808 2.44044 0.4180956479 0.8638808 DataSet_03_387
NPHP1 NFKBIA shRNA Bone_marrow U2OS 0.433014 -1.20751 7.709501e-01 0.90300187 DataSet_03_389
NPHP1 JAZF1 siRNA Cervix HeLa Kyoto 0.590328 -0.76041 1.287128e-01 0.746342017 DataSet_03_396
NPHP1 IKZF2 CRISPR Lymph CAR T Cell 1.70861 0.772821 2.325940e-01 0.722792919 DataSet_03_397
NPHP1 TLE4 CRISPR Lymph CAR T Cell 1.93148 0.949703 1.024876e-01 0.36211058 DataSet_03_398
NPHP1 HMGA1 shRNA Bile_duct HUCCT1 1.59048 0.669459 3.461003e-02 0.221559847 DataSet_03_400
NPHP1 JARID2 siRNA Adipose_tissue human adipose tissue derived stem cells 1.52613 0.60988 3.407826e-02 0.3239928 DataSet_03_403
NPHP1 CDK7 shRNA Bone_marrow D458 0.63125 -0.663717 2.274678e-01 0.58092604 DataSet_03_404
NPHP1 TFAP2A knockout Embryo H9 1.69588 0.762031 4.802803e-03 0.04840786 DataSet_03_405
NPHP1 STRAP knockout Nerve SK-N-AS 1.68915 0.756294 - - DataSet_03_409
NPHP1 FOXK2 shRNA Ovary OVCAR-5 0.423868 -1.23831 3.525668e-02 0.15298980 DataSet_03_419
NPHP1 PRDM1 CRISPR Lymph CD8+ T cells 1.89286 0.920566 - - DataSet_03_421
NPHP1 FOXQ1 CRISPR Lymph Primary CD4+ T cells 1.50388 0.588686 - - DataSet_03_422
NPHP1 IKZF2 shRNA Lymph Hut78 1.61677 0.693114 2.641343e-01 0.73609286 DataSet_03_429
NPHP1 USP7 shRNA Skin xenograft cells 0.454234 -1.13849 0.25914378 0.4348960 DataSet_03_431
NPHP1 PLAG1 shRNA Cord_blood Lin-CD34+ HSPCs 0.589286 -0.762961 - - DataSet_03_432
NPHP1 SUFU shRNA Mammary_gland HCC1954 cells 1.67969 0.748193 0.1736698518 0.6455297 DataSet_03_437
NPHP1 FOXA2 CRISPR Liver iPSCs-derived progenitors and mature hepatocytes 0.594378 -0.750549 7.386435e-01 0.99496042 DataSet_03_439
NPHP1 DAXX shRNA Mammary_gland MDA-MB-231 1.64773 0.720484 2.033493e-01 0.52701752 DataSet_03_441
NPHP1 RELB CRISPR Colon SW480 1.71591 0.778973 2.195484e-03 3.374711e-02 DataSet_03_449
NPHP1 CBX2 siRNA Mammary_gland MCF7 4.71551 2.23741 3.321282e-06 0.0003154395 DataSet_03_451
NPHP1 IRF2 shRNA Cord_Blood CD34+ cells 2.68182 1.42321 - - DataSet_03_460
NPHP1 STAT3 shRNA Liver HepG2 2.16129 1.11189 3.842294e-03 0.0826351896 DataSet_03_465
NPHP1 SMARCA1 Cas13 Embryo_kidney HEK293T 0.465544 -1.10301 - - DataSet_03_466
NPHP1 SMARCA1 CRISPR-Csm Embryo_kidney HEK293T 2.05207 1.03708 - - DataSet_03_467
NPHP1 WHSC1 siRNA Prostate PC3 0.447368 -1.16047 1.668208e-03 0.07741793 DataSet_03_471
NPHP1 CHCHD3 CRISPR Haematopoietic_and_lymphoid_tissue K562 3.5 1.80736 0.6697643 0.9839673 DataSet_04_071
NPHP1 CDC5L CRISPR Haematopoietic_and_lymphoid_tissue K562 2.5 1.32193 0.7399587 0.851910702 DataSet_04_074
Regulation Region

Expression Atlas of NPHP1