Gene Overview
Target Gene: VGF
NCBI Official Symbol: VGF
Entrez ID: 7425
Ensembl ID: ENSG00000128564
Gene Full Name: VGF nerve growth factor inducible
Strand: -
Gene Locus: 7q22.1
External Links:

VGF Significantly Regulated by These T(co)Fs

T(co)Fs that Activate VGF   
T(co)Fs that Repress VGF
The Intensity of the Gene Regulated by T(co)Fs:
VGF-T(co)F Pairs
Target
Gene		 T(co)F Knock
-Method		 Tissue Type Biosample
Name		 Fold
Change		 Log2FC P-value Corrected
_P		 Dataset ID
VGF FOXA1 siRNA Prostate LNCaP 1.73348 0.79367 - - DataSet_01_104
VGF FOXA1 shRNA Prostate 22RV1 0.6267 -0.67416 - - DataSet_01_105
VGF SPDEF shRNA Mammary_gland MCF7 1.72306 0.78497 0.86874 0.99999 DataSet_01_107
VGF HOXA1 siRNA Lung_fibroblast IMR-90 3.96718 1.98812 0.01026 0.10817 DataSet_01_110
VGF ZIC2 siRNA Pancreas PANC1 11.5696 3.53227 - - DataSet_01_121
VGF FOXM1 siRNA Central_nervous_system U87 2.21808 1.14931 - - DataSet_01_122
VGF REST siRNA Uterus Smooth muscle cells 2.94971 1.56057 0.0353 0.99996 DataSet_01_136
VGF REST siRNA Adrenal_gland H295R/TR 1.74718 0.80503 0.00018 0.02566 DataSet_01_145
VGF TFAP2C shRNA Mammary_gland MCF7 2.19168 1.13204 0.00243 0.00645 DataSet_01_150
VGF TEAD4 shRNA Stomach SNU216 2.23377 1.15948 - - DataSet_01_151
VGF ETV1 shRNA Prostate LNCaP 0.59994 -0.73712 6.52009e-11 1.27558e-08 DataSet_01_161
VGF ELK1 siRNA Peripheral_blood CD4+ T cells 0.39057 -1.35634 0.00367 0.02644 DataSet_01_162
VGF GATA3 siRNA Peripheral_blood CD4+ T cells 2.05403 1.03846 0.01512 0.2142 DataSet_01_163
VGF JUN siRNA Peripheral_blood CD4+ T cells 0.43707 -1.19405 0.00805 0.05949 DataSet_01_164
VGF MAF siRNA Peripheral_blood CD4+ T cells 0.39131 -1.35362 0.00314 0.05236 DataSet_01_165
VGF NFATC3 siRNA Peripheral_blood CD4+ T cells 0.24675 -2.01887 0.00021 0.01103 DataSet_01_166
VGF NFKB1 siRNA Peripheral_blood CD4+ T cells 1.67661 0.74555 0.02466 0.42225 DataSet_01_167
VGF STAT3 siRNA Peripheral_blood CD4+ T cells 0.6526 -0.61572 0.13279 0.99183 DataSet_01_168
VGF FOSL1 siRNA Mammary_gland BT549 1.5554 0.63729 0.00053 0.02912 DataSet_01_171
VGF NR4A1 siRNA Pancreas PANC1 1.84463 0.88333 1.3579e-05 0.00105 DataSet_01_174
VGF TCF4 siRNA Autonomic_ganglia SH-SY5Y 2.28465 1.19197 0.00161 0.03645 DataSet_01_185
VGF GATA2 siRNA Prostate LNCaP 0.35936 -1.47649 2.13527e-05 0.00035 DataSet_01_193
VGF CREB1 shRNA Parotid_gland H3118 MEC 2.08426 1.05953 0.94462 0.98036 DataSet_01_194
VGF CREB1 shRNA Parotid_gland HSY 2.48684 1.31431 0.35911 0.97303 DataSet_01_195
VGF TP63 siRNA Head_and_neck SCC-012 1.82894 0.87101 - - DataSet_01_201
VGF MITF shRNA Skin COLO829 1.53297 0.61633 0.17744 0.38428 DataSet_01_207
VGF FOXP1 siRNA Haematopoietic_and_lymphoid_tissue OCI-Ly10 0.6402 -0.64342 - - DataSet_01_208
VGF REST siRNA Prostate LNCaP 12.3839 3.6304 0.00409 0.14151 DataSet_01_211
VGF EGR3 shRNA Prostate M12 1.58277 0.66245 0.0037 0.07362 DataSet_01_212
VGF LIN28A siRNA Embryo H9 4.1034 2.03682 3.24766e-05 0.00163 DataSet_01_215
VGF TAL1 shRNA Haematopoietic_and_lymphoid_tissue HEL 1.9062 0.9307 0.00017 0.00648 DataSet_01_217
VGF ATM shRNA Mammary_gland MCF10A 0.36781 -1.44297 5.04558e-07 1.42961e-05 DataSet_01_219
VGF KLF9 siRNA Liver HepG2 0.53039 -0.91487 0.00068 0.00529 DataSet_01_222
VGF ESR2 siRNA Mammary_gland BT549 1.6358 0.71 4.08957e-05 0.00073 DataSet_01_229
VGF EGR2 siRNA Muscle A673 2.34157 1.22748 0.10914 0.66202 DataSet_01_242
VGF EGR2 siRNA Neuroepithelium SK-N-MC 2.93736 1.55452 0.07868 0.6788 DataSet_01_243
VGF TWIST1 shRNA Stomach CAF32 0.41857 -1.25645 0.00059 0.01678 DataSet_01_253
VGF YBX1 shRNA Mammary_gland MDA 1.84107 0.88055 1.92204e-06 0.00018 DataSet_01_257
VGF SOX4 shRNA Mammary_gland MDA-MB-231 0.58615 -0.77065 0.00351 0.07049 DataSet_01_260
VGF MYT1L shRNA Fetal_spinal_cord SPC04 0.48469 -1.04486 0.10879 0.45904 DataSet_01_264
VGF PTEN shRNA Lung A549 1.59915 0.6773 5.06836e-09 3.47219e-06 DataSet_01_276
VGF AR shRNA Prostate CWR22Pc 2.22528 1.15398 8.23842e-05 0.00505 DataSet_01_278
VGF MSX1 siRNA Tooth Dental Pulp Cells 1.54529 0.62788 0.00242 0.00976 DataSet_01_281
VGF TP53 shRNA Haematopoietic_and_lymphoid_tissue JVM2 2.66111 1.41203 1.81373e-09 1.36551e-07 DataSet_01_286
VGF POSTN shRNA Brain GSC272 2.21099 1.14469 0.08208 0.54319 DataSet_01_293
VGF TFAP4 siRNA Brain BE(2)-C 0.15379 -2.70093 0.26929 0.51625 DataSet_01_295
VGF SOX17 siRNA Umbilical_vein HUVEC 2.24049 1.16382 0.01236 0.99998 DataSet_01_300
VGF PTEN shRNA Skin A431 0.60576 -0.72319 0.03749 0.15842 DataSet_01_301
VGF PTEN shRNA Lung HCC827 0.57975 -0.78651 0.11205 0.6177 DataSet_01_302
VGF ETV5 siRNA Soft_tissue hADSC 4.44774 2.15307 1.48786e-06 0.00058 DataSet_01_304
VGF OVOL2 siRNA Corneal_epithelial Corneal epithelial cells 0.62364 -0.68123 0.06597 0.3363 DataSet_01_313
VGF ELK3 shRNA Mammary_gland MDA-MB-231 0.48894 -1.03227 1.26158e-05 0.00015 DataSet_01_318
VGF REST siRNA Skin NHEK 3.09796 1.63132 5.81539e-06 0.00178 DataSet_01_337
VGF TCF7L1 shRNA Colon HCT116 0.53712 -0.89669 0.00122 0.02438 DataSet_01_346
VGF GATA3 siRNA Oral_cavity OEC-M1 1.79049 0.84036 0.1002 0.99787 DataSet_01_347
VGF SOX2 siRNA Embryo Undifferentiated hESCs 1.58214 0.66187 - - DataSet_01_350
VGF SOX17 siRNA Umbilical_vein HUVEC 1.60448 0.6821 - - DataSet_01_360
VGF GTF2B siRNA Cervix HeLa 0.56494 -0.82384 - - DataSet_01_362
VGF RBM17 shRNA Liver HepG2 2.26415 1.17897 0.15529 0.42748 DataSet_02_100
VGF RBFOX2 shRNA Liver HepG2 3 1.58496 0.10152 0.65168 DataSet_02_101
VGF FIP1L1 shRNA Liver HepG2 5.36567 2.42376 7.11457e-05 0.0094 DataSet_02_103
VGF HDGF shRNA Liver HepG2 5.63218 2.49369 0.00324 0.06957 DataSet_02_104
VGF U2AF2 shRNA Liver HepG2 2.82692 1.49923 0.00395 0.05436 DataSet_02_105
VGF TAF15 shRNA Liver HepG2 0.375 -1.41504 0.06026 0.10322 DataSet_02_106
VGF SSB shRNA Liver HepG2 0.02747 -5.18587 0.00077 0.00677 DataSet_02_107
VGF GTF2F1 shRNA Liver HepG2 0.55769 -0.84246 0.3932 0.69902 DataSet_02_110
VGF BCLAF1 shRNA Liver HepG2 0.61481 -0.70178 0.04822 0.11852 DataSet_02_112
VGF U2AF2 shRNA Liver HepG2 11.6792 3.54588 0.07841 0.18501 DataSet_02_113
VGF XRCC5 shRNA Liver HepG2 1.59615 0.6746 0.24947 0.44975 DataSet_02_114
VGF PCBP1 shRNA Liver HepG2 0.625 -0.67807 0.37024 0.44794 DataSet_02_115
VGF TARDBP shRNA Liver HepG2 0.45643 -1.13153 0.00076 0.0163 DataSet_02_116
VGF PTBP1 shRNA Liver HepG2 31.875 4.99435 0.00121 0.0075 DataSet_02_120
VGF RBM34 shRNA Liver HepG2 0.19231 -2.37851 0.31266 0.64074 DataSet_02_121
VGF HNRNPLL shRNA Liver HepG2 0.07054 -3.82543 0.01236 0.03788 DataSet_02_125
VGF SNRNP70 shRNA Liver HepG2 0.38174 -1.38933 0.0175 0.06656 DataSet_02_126
VGF SRSF3 shRNA Liver HepG2 3.6639 1.87338 2e-04 0.05211 DataSet_02_127
VGF PRPF4 shRNA Liver HepG2 0.33333 -1.58496 0.13347 0.23973 DataSet_02_128
VGF TARDBP shRNA Haematopoietic_and_lymphoid_tissue K562 1.63265 0.70722 0.10837 0.38151 DataSet_02_129
VGF POLR2G shRNA Haematopoietic_and_lymphoid_tissue K562 2.28889 1.19465 0.02837 0.70011 DataSet_02_130
VGF PTBP1 shRNA Haematopoietic_and_lymphoid_tissue K562 6.73469 2.75161 0.00024 0.02779 DataSet_02_131
VGF SRSF7 shRNA Haematopoietic_and_lymphoid_tissue K562 0.65306 -0.61471 0.13023 0.36606 DataSet_02_133
VGF PCBP2 shRNA Haematopoietic_and_lymphoid_tissue K562 5.32653 2.4132 0.00072 0.08267 DataSet_02_135
VGF HNRNPK shRNA Haematopoietic_and_lymphoid_tissue K562 1.89796 0.92445 0.00723 0.15175 DataSet_02_136
VGF TAF15 shRNA Haematopoietic_and_lymphoid_tissue K562 0.5 -1 0.13078 0.35654 DataSet_02_140
VGF RBM34 shRNA Haematopoietic_and_lymphoid_tissue K562 2.12245 1.08573 0.01461 0.2102 DataSet_02_141
VGF BCLAF1 shRNA Haematopoietic_and_lymphoid_tissue K562 3.15094 1.65578 0.00075 0.08476 DataSet_02_142
VGF RBM15 shRNA Haematopoietic_and_lymphoid_tissue K562 2.07547 1.05344 0.0296 0.06981 DataSet_02_143
VGF PTBP1 shRNA Haematopoietic_and_lymphoid_tissue K562 0.38095 -1.39232 0.01388 0.19832 DataSet_02_144
VGF DROSHA shRNA Haematopoietic_and_lymphoid_tissue K562 0.63492 -0.65535 0.02387 0.51061 DataSet_02_145
VGF CCAR2 shRNA Haematopoietic_and_lymphoid_tissue K562 2.43165 1.28194 0.02644 0.47274 DataSet_02_146
VGF ILF3 shRNA Haematopoietic_and_lymphoid_tissue K562 0.45946 -1.12199 0.04428 0.30553 DataSet_02_148
VGF NONO shRNA Haematopoietic_and_lymphoid_tissue K562 1.97015 0.9783 0.16259 0.35791 DataSet_02_149
VGF ILF2 shRNA Haematopoietic_and_lymphoid_tissue K562 0.33735 -1.56768 6e-04 0.23369 DataSet_02_152
VGF YBX3 shRNA Haematopoietic_and_lymphoid_tissue K562 0.42342 -1.23983 0.00727 0.41577 DataSet_02_153
VGF SUB1 shRNA Haematopoietic_and_lymphoid_tissue K562 2.03061 1.02191 0.12917 0.74695 DataSet_02_161
VGF AGO1 shRNA Haematopoietic_and_lymphoid_tissue K562 1.66667 0.73697 0.20526 0.67058 DataSet_02_162
VGF TAF15 shRNA Haematopoietic_and_lymphoid_tissue K562 0.6 -0.73697 0.04307 0.28387 DataSet_02_163
VGF SSB shRNA Haematopoietic_and_lymphoid_tissue K562 0.35417 -1.4975 0.05695 0.24725 DataSet_02_164
VGF U2AF1 shRNA Haematopoietic_and_lymphoid_tissue K562 7.375 2.88264 0.00488 0.13212 DataSet_02_165
VGF RBM25 shRNA Haematopoietic_and_lymphoid_tissue K562 0.3125 -1.67807 0.09426 0.29734 DataSet_02_166
VGF RBM22 shRNA Haematopoietic_and_lymphoid_tissue K562 8.42857 3.07529 0.00015 0.05289 DataSet_02_168
VGF TARDBP shRNA Haematopoietic_and_lymphoid_tissue K562 0.37391 -1.41923 0.01483 0.06163 DataSet_02_169
VGF U2AF2 shRNA Haematopoietic_and_lymphoid_tissue K562 8.8125 3.13955 0.00142 0.04371 DataSet_02_170
VGF LMNA siRNA Haematopoietic_and_lymphoid_tissue K562 0.57759 -0.79189 0.96226 1 DataSet_02_175
VGF ZNF180 siRNA Haematopoietic_and_lymphoid_tissue K562 0.3587 -1.47917 0.5976 1 DataSet_02_177
VGF VEZF1 siRNA Haematopoietic_and_lymphoid_tissue K562 0.45092 -1.14906 0.09037 1 DataSet_02_179
VGF RAD21 siRNA Haematopoietic_and_lymphoid_tissue K562 7 2.80735 0.10038 1 DataSet_02_190
VGF TCP1 siRNA Haematopoietic_and_lymphoid_tissue K562 0.42241 -1.24327 0.7404 1 DataSet_02_194
VGF CHD2 siRNA Haematopoietic_and_lymphoid_tissue K562 4.9375 2.30378 0.07742 0.19054 DataSet_02_196
VGF UBTF siRNA Haematopoietic_and_lymphoid_tissue K562 0.64407 -0.63472 0.10967 1 DataSet_02_198
VGF E2F4 siRNA Haematopoietic_and_lymphoid_tissue K562 0.57759 -0.79189 0.75308 1 DataSet_02_200
VGF AR siRNA Prostate LNCaP 2.95529 1.5633 0.033619691015088 1 DataSet_03_005
VGF ATF3 knockout Colon HCT116 0.36651 -1.44807 0.000458229213843862 0.0999371977890793 DataSet_03_017
VGF BCL6 siRNA Lymph Pfeiffer DLBCL 1.52331 0.607209 0.217952788103631 0.690081698234617 DataSet_03_026
VGF BCL6 siRNA Central_nervous_system U87 0.448786 -1.1559 2.03138360798437e-06 0.00119441661130807 DataSet_03_027
VGF CEBPB siRNA Embryo hESC 2.43355 1.28306 0.214744191135509 0.597872223290075 DataSet_03_049
VGF FOXA1 siRNA Mammary_gland MCF7 3.10954 1.6367 1.15649019588739e-07 1.5551655370588e-05 DataSet_03_080
VGF FOXA1 siRNA Prostate LNCaP 1.50253 0.587392 0.0776773741641133 0.348669665888989 DataSet_03_083
VGF FOXO1 siRNA Skin primary human dermal lymphatic endothelial cells 0.17549 -2.51054 - - DataSet_03_096
VGF GATA3 siRNA Mammary_gland MCF7 1.85091 0.888238 0.00957986537685011 0.999831535534034 DataSet_03_102
VGF GATA4 siRNA Stomach YCC3 1.67886 0.747486 0.175692120148857 0.71257509964585 DataSet_03_107
VGF GATA6 siRNA Stomach AGS 0.429243 -1.22013 0.00251962318657871 0.164841208777528 DataSet_03_108
VGF HDAC3 siRNA Mammary_gland MCF7 1.61035 0.687375 0.0283556928583951 0.99997791025972 DataSet_03_114
VGF HES6 siRNA Brain A172 2.36638 1.24268 6.00174675564277e-06 0.0195955847427337 DataSet_03_116
VGF HINFP siRNA Bone_marrow U2OS 1.84631 0.884647 0.000396655550107051 0.0179194485599117 DataSet_03_123
VGF MAFB siRNA Peripheral_blood Monocyte-derived M-CSF macrophages 1.87038 0.903333 0.213045572481246 1 DataSet_03_155
VGF MEF2D shRNA Liver HuH7 0.659505 -0.600545 - - DataSet_03_162
VGF MITF siRNA Skin MZ7 3.30709 1.72556 3.23732923372441e-12 2.61199768453104e-10 DataSet_03_165
VGF MYB siRNA Cord_Blood CD34+ progenitor cells 2.09092 1.06414 - - DataSet_03_170
VGF MYC siRNA Colon HT29 3.32776 1.73455 - - DataSet_03_177
VGF NR4A3 siRNA Pancreas 1.1B4 1.82632 0.868943 6.88663637904973e-05 0.000612300615516151 DataSet_03_203
VGF PHB shRNA Embryo Embryonic stem cells (ESCs) 1.52207 0.606038 0.0407755849170659 0.0960403840960476 DataSet_03_211
VGF PPARG siRNA Peripheral_blood GM-CSF Macrophage 0.609909 -0.713333 0.116536930733821 0.922220356616359 DataSet_03_214
VGF PRRX1 CRISPR Neuroblastoma 691-MES 0.562295 -0.8306 0.559275517687005 0.940436043016154 DataSet_03_217
VGF RELB siRNA Immortalized_keratinocyte HaCaT 0.484142 -1.0465 3.38713296773498e-05 0.000512866307230685 DataSet_03_227
VGF REST siRNA Adrenal_gland H295R/TR 1.77875 0.830863 4.87607211127987e-07 0.00066850948645647 DataSet_03_228
VGF SOX2 siRNA Embryo NTera-2 0.66273 -0.593507 0.000360368786983718 0.0168807761162333 DataSet_03_243
VGF SOX2 CRISPR Seminoma-like TCam-2 0.12724 -2.97438 0.00414939419282122 0.709117159297309 DataSet_03_244
VGF SOX4 siRNA Haematopoietic_and_lymphoid_tissue ST1 0.214286 -2.22239 - - DataSet_03_246
VGF SP1 siRNA Mammary_gland MDA-MB-231 0.273178 -1.87208 0.15711667324325 0.413972819854456 DataSet_03_250
VGF STAT3 CRISPR Embryo hESC 2.43379 1.28321 0.133745584310871 0.198374811761279 DataSet_03_258
VGF TP53 knockout Haematopoietic_and_lymphoid_tissue MOLP8 0.641743 -0.639932 0.00328803271878676 0.402124361166128 DataSet_03_280
VGF ZNF165 siRNA Mammary_gland SUM159 1.53867 0.621681 0.65743801257685 0.999998167536832 DataSet_03_288
VGF ZNF746 siRNA Colon HCT116 1.78262 0.834 - - DataSet_03_293
VGF APTX CRISPR Haematopoietic_and_lymphoid_tissue K562 4.44595 2.15249 0.0081008699133292 0.423353473090641 DataSet_04_001
VGF CDC5L CRISPR Haematopoietic_and_lymphoid_tissue K562 5.47692 2.45337 0.00184842875443149 0.0452308617416838 DataSet_04_002
VGF CIZ1 CRISPR Haematopoietic_and_lymphoid_tissue K562 0.321739 -1.63604 0.00331448654480529 0.0257225348314739 DataSet_04_004
VGF DDX59 CRISPR Haematopoietic_and_lymphoid_tissue K562 1.72566 0.787151 0.00286813998850927 0.465368223572531 DataSet_04_006
VGF EIF2AK2 CRISPR Haematopoietic_and_lymphoid_tissue K562 0.48249 -1.05143 0.00489474263534271 0.444313118393627 DataSet_04_008
VGF FUBP3 CRISPR Haematopoietic_and_lymphoid_tissue K562 0.663717 -0.59136 0.0205629337521655 0.745788425305226 DataSet_04_011
VGF MARK2 shRNA Haematopoietic_and_lymphoid_tissue K562 1.77907 0.831123 0.145491020746796 0.20924174892574 DataSet_04_012
VGF MECP2 CRISPR Haematopoietic_and_lymphoid_tissue K562 0.594595 -0.750022 0.284180830099719 0.848572146483105 DataSet_04_013
VGF NKRF shRNA Haematopoietic_and_lymphoid_tissue K562 14.3227 3.84023 0.023555492799041 0.0844367554984704 DataSet_04_014
VGF NUP35 shRNA Haematopoietic_and_lymphoid_tissue K562 1.90698 0.931287 0.12078651818078 0.186691607870022 DataSet_04_015
VGF SMAD2 CRISPR Haematopoietic_and_lymphoid_tissue K562 2.9 1.53605 0.0728697685050334 0.185649024586057 DataSet_04_018
VGF SMAD4 CRISPR Haematopoietic_and_lymphoid_tissue K562 0.621622 -0.685891 0.342530729180311 0.510503265388004 DataSet_04_019
VGF ZNF574 CRISPR Haematopoietic_and_lymphoid_tissue K562 6.77273 2.75974 6.26087335540049e-05 0.113567209536072 DataSet_04_023
VGF CIZ1 CRISPR Liver HepG2 2.11594 1.0813 0.156095103451534 0.392027208668404 DataSet_04_026
VGF E4F1 CRISPR Liver HepG2 1.94118 0.956931 0.00450812893413299 0.189241048263897 DataSet_04_028
VGF NFX1 CRISPR Liver HepG2 2.85507 1.51353 0.0939837286782457 0.16126156161756 DataSet_04_032
VGF PAN2 CRISPR Liver HepG2 2.2 1.1375 0.0999177736794677 0.254883609027416 DataSet_04_033
VGF YBX1 CRISPR Liver HepG2 0.224719 -2.15381 0.119278459956803 0.972884761036538 DataSet_04_039
VGF ACTN4 CRISPR Liver HepG2 0.166667 -2.58496 0.00868896176987731 0.0538220428166956 DataSet_04_042
VGF CNOT7 CRISPR Liver HepG2 0.35443 -1.49643 5.3424019720402e-05 0.00988798466870122 DataSet_04_045
VGF DNMT3B CRISPR Liver HepG2 3.41176 1.77052 0.0148989430939867 0.127002067697829 DataSet_04_044
VGF RIOK2 CRISPR Liver HepG2 0.652174 -0.616671 0.600916713907597 1 DataSet_04_070
VGF SEPT11 CRISPR Liver HepG2 0.291892 -1.77649 0.000921818636945183 0.037805039326536 DataSet_04_068
VGF ABT1 shRNA Liver HepG2 6.4058 2.67938 0.00329232104151644 0.0169776311803318 DataSet_04_052
VGF CALR shRNA Liver HepG2 0.404762 -1.30485 0.033816963500202 0.0849248986428771 DataSet_04_053
VGF CCAR1 shRNA Liver HepG2 4.51261 2.17396 5.43772354418369e-05 0.00764560219933167 DataSet_04_054
VGF CNOT7 shRNA Liver HepG2 7.26471 2.8609 0.00213092242906773 0.0105022417628 DataSet_04_051
VGF NPM1 shRNA Liver HepG2 2.15094 1.10497 0.105557458875365 0.479379117586333 DataSet_04_058
VGF PRPF6 shRNA Liver HepG2 9.92157 3.31057 0.00288052495370691 0.0468269935055153 DataSet_04_056
VGF UBE2L3 shRNA Liver HepG2 2.78049 1.47534 0.00104431499754984 0.0117496535190615 DataSet_04_055
VGF YBX3 shRNA Liver HepG2 0.528846 -0.91908 0.0808980692663042 0.218625610224794 DataSet_02_98
VGF ACTN4 CRISPR Haematopoietic_and_lymphoid_tissue K562 2.28235 1.19052 0.0315624968014238 0.133281954331824 DataSet_04_048
VGF DDX17 CRISPR Haematopoietic_and_lymphoid_tissue K562 1.69231 0.758992 0.0560063086901707 0.585290369505834 DataSet_04_047
VGF RIOK2 CRISPR Haematopoietic_and_lymphoid_tissue K562 0.475 -1.074 0.0233256554684682 0.52481850428908 DataSet_04_076
VGF SMG5 CRISPR Haematopoietic_and_lymphoid_tissue K562 0.388889 -1.36257 0.155856575981943 0.561247609828288 DataSet_04_073
VGF SNW1 CRISPR Haematopoietic_and_lymphoid_tissue K562 9.36111 3.22668 0.000537825871254536 0.0140437487468354 DataSet_04_049
VGF DPF2 CRISPRi Haematopoietic_and_lymphoid_tissue K562 0.463315 -1.10993 0.0136026046373783 0.046454848213292 DataSet_02_14
VGF HMGN3 CRISPRi Haematopoietic_and_lymphoid_tissue K562 1.50815 0.592782 0.376245230898156 0.781621159696957 DataSet_02_45
VGF LDB1 CRISPRi Haematopoietic_and_lymphoid_tissue K562 0.400815 -1.31899 0.0136217421631006 0.0499727395017024 DataSet_02_35
VGF NFE2L1 CRISPRi Haematopoietic_and_lymphoid_tissue K562 0.658967 -0.601721 0.229709113530148 0.506791646829675 DataSet_02_32
VGF TEAD2 CRISPRi Haematopoietic_and_lymphoid_tissue K562 0.626359 -0.674939 0.073763558637411 0.153088266903976 DataSet_02_33
VGF ABT1 shRNA Haematopoietic_and_lymphoid_tissue K562 0.236842 -2.078 0.0179345707372469 0.072090973362664 DataSet_04_060
VGF CCAR1 shRNA Haematopoietic_and_lymphoid_tissue K562 4.45045 2.15395 5.84972080508124e-05 0.0366438790055592 DataSet_04_064
VGF DDX1 shRNA Haematopoietic_and_lymphoid_tissue K562 1.5045 0.589288 0.164429241040312 0.618338484611331 DataSet_04_063
VGF HDGF shRNA Haematopoietic_and_lymphoid_tissue K562 1.88372 0.913585 0.0739403981536727 0.13959633146811 DataSet_04_059
VGF PRPF6 shRNA Haematopoietic_and_lymphoid_tissue K562 4.29592 2.10297 0.00794512508709586 0.238691829721617 DataSet_04_065
VGF CNOT3 shRNA Lung A549 1.67057 0.74034 1.779758e-01 0.8830540 DataSet_03_340
VGF TET1 siRNA Lung H1299 1.51496 0.59928 - - DataSet_03_319
VGF TET1 siRNA Lung H1299 1.51496 0.59928 - - DataSet_03_321
VGF SMARCA4 siRNA Colon HCT116 2.25096 1.17054 2.280305e-02 0.1657143 DataSet_03_302
VGF ELF3 knockdown Bile_duct HBDEC2 0.477341 -1.06691 1.973265e-05 3.944049e-03 DataSet_03_305
VGF EZH2 shRNA Mammary_gland MCF7 0.432483 -1.20929 4.343363e-07 1.000443e-04 DataSet_03_331
VGF DNMT1 shRNA Lung hTERT-immortalised adult fibroblasts 2.23264 1.15875 1.523799e-05 6.556926e-03 DataSet_03_311
VGF CREBBP CRISPR Brain U5-NPC 10.8788 3.44345 0.2700436393 0.7490853 DataSet_03_356
VGF TP53 CRISPR Brain U5-NPC 7.84848 2.97241 3.350352e-01 4.644420e-01 DataSet_03_358
VGF ARID2 shRNA Haematopoietic_and_lymphoid_tissue MM.1S 2.00778 1.0056 5.069424e-01 6.076527e-01 DataSet_03_362
VGF MYC siRNA Peripheral_blood T lymphocyte 0.516969 -0.951851 2.437417e-03 0.033205365 DataSet_03_363
VGF EP300 shRNA Mammary_gland MCF10AT 2.77241 1.47114 1.000541e-02 0.074464221 DataSet_03_364
VGF TP53 knockout Stomach SNU1 0.361719 -1.46706 0.4277638123 0.9354741 DataSet_03_365
VGF USP22 shRNA Liver PLC_PRF_5 cells 0.33871 -1.56188 1.342169e-02 0.12868654 DataSet_03_368
VGF ZFP36L1 siRNA Urinary_bladder J82 2.1493 1.10386 - - DataSet_03_371
VGF ZNF213 siRNA Mammary_gland MCF7 0.317435 -1.65547 4.074770e-02 3.818949e-01 DataSet_03_376
VGF EZH2 CRISPR Ovary SKOV3 0.0695067 -3.8467 1.365053e-06 0.0005891824 DataSet_03_378
VGF ZBTB7A siRNA Stomach BGC823 0.65931 -0.600971 - - DataSet_03_380
VGF NFKB2 siRNA Bone_marrow U2OS 1.56338 0.644671 1.261780e-01 0.42590795 DataSet_03_381
VGF DNMT1 siRNA Skin Human melanoma cells 0.316459 -1.65991 7.302665e-07 2.463559e-05 DataSet_03_382
VGF YY1 shRNA Brain GSC1517 0.660625 -0.598096 - - DataSet_03_384
VGF KAT6A CRISPR Haematopoietic_and_lymphoid_tissue MOLM-13 0.533887 -0.905393 0.3686973229 0.8516615 DataSet_03_387
VGF TRIM8 siRNA Mammary_gland MCF7 0.53426 -0.904387 1.262951e-04 0.0045701302 DataSet_03_388
VGF YY1 knockdown Liver HepG2 29.8245 4.89842 4.424982e-12 4.505303e-10 DataSet_03_390
VGF ILF2 siRNA Stomach SGC-7901 2.02941 1.02106 0.7147557638 0.78655063 DataSet_03_393
VGF IKZF2 CRISPR Lymph CAR T Cell 0.487617 -1.03618 9.717275e-02 0.532578765 DataSet_03_397
VGF RELA CRISPR Brain T30 2.39347 1.2591 0.2902053948 0.8400824 DataSet_03_399
VGF HMGA1 shRNA Bile_duct HUCCT1 4.26452 2.09238 1.575198e-03 0.047259665 DataSet_03_400
VGF SUMO1 CRISPR Bone_marrow U2OS 0.631229 -0.663765 4.041212e-03 3.238221e-02 DataSet_03_401
VGF CDK7 shRNA Bone_marrow D458 14 3.80735 9.009390e-02 0.39125444 DataSet_03_404
VGF TFAP2A knockout Embryo H9 0.382023 -1.38827 5.989141e-02 0.16099568 DataSet_03_405
VGF SATB2 CRISPR Colon Colon organoid 0.55814 -0.841302 6.918487e-01 1.00000000 DataSet_03_406
VGF CHD1 shRNA Prostate LNCaP 0.613333 -0.705257 1.868620e-02 3.103736e-01 DataSet_03_407
VGF MAP3K7 shRNA Prostate LNCaP 0.506667 -0.980891 5.533423e-04 1.397403e-02 DataSet_03_408
VGF STRAP knockout Nerve SK-N-AS 0.555699 -0.847624 - - DataSet_03_409
VGF SIRT1 siRNA Pancreas PANC1 0.407213 -1.29615 6.086539e-03 0.038894145 DataSet_03_410
VGF E2F6 shRNA Liver HuH7 0.290854 -1.78163 - - DataSet_03_412
VGF E2F1 siRNA Prostate LNCaP 0.644444 -0.633872 2.004211e-01 0.7226289181 DataSet_03_413
VGF E2F2 siRNA Prostate LNCaP 0.662963 -0.593 2.226431e-01 4.827130e-01 DataSet_03_414
VGF ZKSCAN3 CRISPR Colon HCT116 0.43628 -1.19667 9.944631e-02 0.477954918 DataSet_03_415
VGF NFATC2 shRNA Haematopoietic_and_lymphoid_tissue THP-1 2.11538 1.08092 2.100437e-02 0.092052481 DataSet_03_418
VGF FOXK2 shRNA Ovary OVCAR-5 6.82782 2.77142 6.953828e-04 0.08266460 DataSet_03_419
VGF BRD4 CRISPR Lymph CD8+ T cells 2.66667 1.41504 - - DataSet_03_420
VGF PRDM1 CRISPR Lymph CD8+ T cells 2 1 - - DataSet_03_421
VGF LHX2 shRNA Bone_marrow ES-derived RPE cells 1.90323 0.928447 6.513141e-02 1.000000e+00 DataSet_03_428
VGF STAT3 siRNA Peripheral_blood Monocyte-derived M-CSF macrophages 31.3571 4.97072 0.0162136747 1 DataSet_03_430
VGF USP7 shRNA Skin xenograft cells 0.309676 -1.69117 0.26585701 0.4348960 DataSet_03_431
VGF PLAG1 shRNA Cord_blood Lin-CD34+ HSPCs 3 1.58496 - - DataSet_03_432
VGF POU2AF1 CRISPR Haematopoietic_and_lymphoid_tissue OCI-Ly7 1.83358 0.874666 3.855258e-01 0.604902816 DataSet_03_434
VGF SUFU shRNA Mammary_gland HCC1954 cells 0.524823 -0.930098 0.2666501927 0.6455297 DataSet_03_437
VGF FOXA2 CRISPR Liver iPSCs-derived progenitors and mature hepatocytes 6 2.58496 1.418088e-03 0.22290331 DataSet_03_439
VGF PURA siRNA Cervix HeLa 0.582822 -0.778873 1.919621e-02 0.124311439 DataSet_03_444
VGF CAMTA1 knockout Embryo_kidney HEK293T 2.375 1.24793 1.667751e-02 0.12260281 DataSet_03_448
VGF RELB CRISPR Colon SW480 0.450856 -1.14926 4.440640e-02 1.818669e-01 DataSet_03_449
VGF CBX2 siRNA Mammary_gland MCF7 2.07846 1.05552 1.573274e-04 0.0017647771 DataSet_03_451
VGF ZFP36L1 CRISPR Lung NCI-H1876 0.225056 -2.15164 2.358972e-01 0.992381486 DataSet_03_454
VGF IRF2 shRNA Cord_Blood CD34+ cells 5.33333 2.41504 - - DataSet_03_460
VGF TXNIP shRNA Cord_Blood CD34+ cells 8.5 3.08746 - - DataSet_03_461
VGF TXNIP shRNA Cord_blood ST3 7 2.80735 2.645420e-02 0.2301017969 DataSet_03_462
VGF SOX9 knockout Liver HuH7 0.454545 -1.1375 2.330654e-01 4.178585e-01 DataSet_03_463
VGF PARP1 knockout Embryo_kidney HEK293a 2.53871 1.34409 1.881332e-06 2.395831e-05 DataSet_03_464
VGF STAT3 shRNA Liver HepG2 2.875 1.52356 1.215643e-02 0.1663431853 DataSet_03_465
VGF SMARCA1 Cas13 Embryo_kidney HEK293T 3.42857 1.77761 - - DataSet_03_466
VGF SMARCA1 CRISPR-Csm Embryo_kidney HEK293T 3.61905 1.85561 - - DataSet_03_467
VGF LIN28A siRNA Mammary_gland MCF7M 2.19273 1.13273 8.349765e-03 0.1960463 DataSet_03_469
VGF LIN28A siRNA Mammary_gland MCF7M 2.19273 1.13273 8.349765e-03 0.1960463 DataSet_03_470
VGF EZH2 siRNA Prostate LNCaP 0.417162 -1.26132 - - DataSet_03_472
VGF EZH2 siRNA Umbilical_vein HUVEC 1.61765 0.693897 1.209755e-01 0.359822905 DataSet_03_473
VGF CREBBP CRISPR Lymph U2932 2.15385 1.10691 4.083688e-01 1.0000000 DataSet_03_474
VGF APTX CRISPR Haematopoietic_and_lymphoid_tissue K562 4.44595 2.15249 0.002665251 0.3407931 DataSet_04_072
VGF CDC5L CRISPR Haematopoietic_and_lymphoid_tissue K562 5.47692 2.45337 0.001608967 0.01703885 DataSet_04_074
Regulation Region
 
T(co)Fs that significantly regulate SOX2 by the evidences of both expression and ChIP-seq/motif
Expression Atlas of VGF
Gene Expression in Human Normal Tissues (GTEx) Gene Expression in Cancer Cell Lines (CCLE)
Gene Expression in Human Cancers (TCGA) Gene Expression in Encode Cell Lines